New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5492542 =	48 (0.820)	4 (0.070)	4/248	NT	8.5%	coding (1474/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
	?	NC_002947	5492572 =	40 (0.710)					coding (1444/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase

CGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGTTGTCCGACAGCGACATCACGCAGAAG  >  NC_002947/5492396‑5492687                                                                                                                                                   |                                                                                                                                                    cGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCa                                                                                                                                                   <  8:212732/149‑1 (MQ=255)  gATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAg                                                                                                                                                  >  2:366517/1‑149 (MQ=255)      cAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGc                                                                                                                                               >  4:105758/1‑148 (MQ=255)         ccAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCcaca                                                                                                                                           >  3:155517/1‑149 (MQ=255)             cACCATGGTTCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGa                                                                                                                                       <  8:57/149‑1 (MQ=255)             cACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACAcc                                                                                                                                         >  6:313398/1‑147 (MQ=255)              aCCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAg                                                                                                                                      >  8:268893/1‑149 (MQ=255)                 aTGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑g                                                                                                                                  >  1:337935/1‑149 (MQ=255)                     tGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCTCACCGAGCT‑GGTGc                                                                                                                              <  4:155517/149‑1 (MQ=255)                     tGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGc                                                                                                                              <  2:212240/149‑1 (MQ=255)                        gcATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCAGTCACGATCTCGGCGCACAACCTCCAGGGCCACAACGAGCT‑GGTGCggc                                                                                                                           >  8:93707/1‑149 (MQ=255)                          aTGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCGCACC‑AGCTCGGTGTggccc                                                                                                                         <  5:313747/149‑2 (MQ=255)                          aTGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCGCACC‑AGCTCGGTGTggccc                                                                                                                         <  4:109143/149‑2 (MQ=255)                          aTGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCggcc‑t                                                                                                                        <  8:203678/149‑1 (MQ=255)                          aTGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCggcc‑t                                                                                                                        >  4:50363/1‑149 (MQ=255)                                aCCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCtt                                                                                                                  >  7:209002/1‑149 (MQ=255)                                  ctgcgtgatgtcgctgtcggacaacctcaagccctggtcgatcattgaaaagcgcctggacctggctgcccaggccgacctggtgctggccttctacaacccgatctccaaggCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCtt                                                                                                                  >  7:320853‑M1/114‑147 (MQ=255)                                   aTTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGga                                                                                                               <  4:271965/149‑1 (MQ=255)                                    tttCTGGCAGCAGTTCGGCCAAGATGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTg                                                                                                                 >  5:296609/1‑146 (MQ=255)                                          gcagcaGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCggg                                                                                                        <  4:268911/149‑1 (MQ=255)                                          gcagcaGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCg                                                                                                          <  5:313398/147‑1 (MQ=255)                                            tcgctgtcggacaacctcaagccctggtcgatcattgaaaagcgcctggacctggctgcccaggccgacctggtgctggccttctacaacccgatctccaaggCCAGGGCCACACCGAGCT‑GGTGCggcc‑tggcct                                                                                                                   <  2:98635‑M1/33‑1 (MQ=255)                                            tcgctgtcggacaacctcaagccctggtcgatcattgaaaagcgcctggacctggctgcccaggccgacctggtgctggccttctacaacccgatctccaaggCCAGGGCCACACCGAGCT‑GGTGCggcc‑tggcct                                                                                                                   >  1:98635‑M1/104‑136 (MQ=255)                                               agTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTa                                                                                                   <  1:366517/149‑1 (MQ=255)                                                    ggCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCATACCGATGTAACGTCCAAGGACTACAGGCGTGTTCCCTTCACTATGTCTGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAg                                                                                               <  7:93707/148‑1 (MQ=255)                                                     gCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGc                                                                                             >  5:239920/1‑149 (MQ=255)                                                        aaGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAg                                                                                          >  3:246833/1‑149 (MQ=255)                                                                tACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGt                                                                                  >  8:125605/1‑149 (MQ=255)                                                                tACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGt                                                                                  >  2:196882/1‑149 (MQ=255)                                                                   cTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTa                                                                                                   >  5:355488/1‑129 (MQ=255)                                                                   cTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTa                                                                                                   <  6:355488/129‑1 (MQ=255)                                                                               ccccGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGACGGCCAGCACCAGGTCGGCCTGGGCAGc                                                                     >  5:113179/1‑147 (MQ=255)                                                                               ccccGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGc                                                                     >  7:81596/1‑147 (MQ=255)                                                                                 ccGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAgg                                                                 >  3:89045/1‑149 (MQ=255)                                                                                  cGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGt                                                                <  3:50363/149‑1 (MQ=255)                                                                                    gCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTcc                                                              <  4:243775/149‑1 (MQ=255)                                                                                      cTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGcc                                                                    <  8:62006/141‑1 (MQ=255)                                                                                      cTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAg                                                            <  7:125605/149‑1 (MQ=255)                                                                                      cTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAACGCCAGCACCAGGTCGGCCTGGGCAGCCaacatcg                                                             >  7:62006/1‑142 (MQ=255)                                                                                             tGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCttt                                                     <  6:296609/149‑1 (MQ=255)                                                                                               tCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCtttt                                                    >  7:75968/1‑148 (MQ=255)                                                                                                 aCGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTgg                                                                                                                >  5:309385/1‑86 (MQ=255)                                                                                                 aCGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTgg                                                                                                                <  6:309385/86‑1 (MQ=255)                                                                                                 aCGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCaa                                                 <  7:268893/149‑1 (MQ=255)                                                                                                  cGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAAt                                                <  8:81596/149‑1 (MQ=255)                                                                                                      cAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATc                                            >  6:222494/1‑149 (MQ=255)                                                                                                      cAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATc                                            <  8:209002/149‑1 (MQ=255)                                                                                                           aCTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCa                                       <  2:337935/149‑1 (MQ=255)                                                                                                               cAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAgg                                     <  6:239920/147‑1 (MQ=255)                                                                                                                       ttCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGtt                           >  2:208892/1‑149 (MQ=255)                                                                                                                                 gATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGTTGTCCGACAGc                 <  4:246833/149‑1 (MQ=255)                                                                                                                                     tCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGTTGTCCGACAGCGACa             >  8:143432/1‑149 (MQ=255)                                                                                                                                     cccgatctccaaggCCAGG‑CCGCACC‑AGCTCGGTGTGGCCCTGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGTTGTCCGACAGCGACa             <  1:20101‑M1/135‑1 (MQ=255)                                                                                                                                         cgcACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGTTGTCCGACAGCGACATCAc         <  3:105758/149‑1 (MQ=255)                                                                                                                                               aCCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGCTTGTCCGACAGCGACATCACGCAGaa   <  1:196882/149‑1 (MQ=255)                                                                                                                                                ccTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGTTGTCCGACAGCGACATCACGCAGAAg  >  4:123572/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACGGCCAAGGACTACAGGCGTGTTCCCGTCACGATGTCGGCGCACAACCTCCAGGGCCACACCGAGCT‑GGTGCGGCC‑TGGCCTTGGAGATCGGGTTGTAGAAGGCCAGCACCAGGTCGGCCTGGGCAGCCAGGTCCAGGCGCTTTTCAATGATCGACCAGGGCTTGAGGTTGTCCGACAGCGACATCACGCAGAAG  >  NC_002947/5492396‑5492687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.