New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5637379 =	47 (0.800)	3 (0.050)	3/250	NT	6.4%	coding (1747/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	5637419 =	42 (0.740)					coding (1787/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

ATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCC  >  NC_002947/5637232‑5637523                                                                                                                                                    |                                                                                                                                                  cgcctggtgcgactgtttcacatggcgcagggaaaacaactcggccgtactgcgcagcgcagcaaagcgctggcgcagcagggcgctggaatcgaacatgcggatgcctccgtgtacacggtggctccccctagaaccacccgtcttGc                                                                                                                                                  >  7:20065‑M1/148‑149 (MQ=255)    ggCTGGCGCGGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCAtt                                                                                                                                               <  4:82569/149‑1 (MQ=255)     gctggcgctggcTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGATGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTg                                                                                                                                              >  7:176181/1‑149 (MQ=255)         gcgctggcTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTc                                                                                                                                           >  3:114482/1‑148 (MQ=255)         gcgctggcTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTc                                                                                                                                           <  2:10685/148‑1 (MQ=255)                 tggAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGAacac                                                                                                                                  >  5:273444/1‑149 (MQ=255)                  ggAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAgg                                                                                                                                       <  3:82837/143‑1 (MQ=255)                  ggAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAgg                                                                                                                                       >  4:82837/1‑143 (MQ=255)                      cAGGGGGTTCACGCCGTGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTCACCTGGGAAGTTCCGGGGTGCCATAATGAGCTGGCATTGCTCGAGGCACAcgacga                                                                                                                             <  1:76490/149‑1 (MQ=255)                      cAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACAcgacga                                                                                                                             >  8:343466/1‑149 (MQ=255)                      cAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCAATAATGAGCTGGCATTGCTCGAGGAACAcgacga                                                                                                                             <  2:155340/149‑1 (MQ=255)                       aGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACacga                                                                                                                                >  2:264321/1‑145 (MQ=255)                       aGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACacga                                                                                                                                <  1:264321/145‑1 (MQ=255)                       aGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACAcgacga                                                                                                                             >  2:71037/1‑148 (MQ=255)                        ggCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACCGCTGCTGATCGCGCCTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGCGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATa                                                                                                                           >  1:88032/1‑149 (MQ=255)                                 cGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCg                                                                                                                  >  2:153727/1‑149 (MQ=255)                                 cGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCg                                                                                                                  >  3:50076/1‑149 (MQ=255)                                       gCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGTCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGTTGCCATAATGAGCTGGAATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGc                                                                                                            <  7:55407/149‑1 (MQ=255)                                         ttGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGc                                                                                                            >  7:76606/1‑147 (MQ=255)                                           ggccgtactgcgcagcgcagcaaagcgctggcgcagcagggcgctggaatcgaacatgcggatgcctccgtgtacacggtggctccccctagaaccacccgtcttGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGa                                                                                                        >  3:19639‑M1/106‑149 (MQ=255)                                              aTGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTgg                                                                                                                                                   <  5:300085/103‑1 (MQ=255)                                              aTGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTgg                                                                                                                                                   >  6:300085/1‑103 (MQ=255)                                               tGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGTTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACggg                                                                                                    <  8:76606/149‑1 (MQ=255)                                                gCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggt                                                                                                   >  8:20728/1‑149 (MQ=255)                                                 cTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggtg                                                                                                  <  7:343466/149‑1 (MQ=255)                                                 cTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggt                                                                                                   <  7:77780/148‑1 (MQ=255)                                                   cAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggtggt                                                                                                >  3:103137/1‑149 (MQ=255)                                                       ggAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGAc                                                                                                       >  8:341791/1‑138 (MQ=255)                                                       ggAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGAc                                                                                                       <  7:341791/138‑1 (MQ=255)                                                           cGGCTGCTTATCGCGAATTCTACCTGGGCAAGCTGAAAGGTGCGCGTTATTTCCTGACCTGGGAATTACCGGGCTGCCAAAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAgggg                                                                                        <  8:310020/149‑1 (MQ=255)                                                             gctgctGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCg                                                                                                                  >  5:53431/1‑121 (MQ=255)                                                             gctgctGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGa                                                                                      <  6:147575/149‑1 (MQ=255)                                                              ctgctgATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAg                                                                                     <  7:20728/149‑1 (MQ=255)                                                              ctgcggATCGCGACTTCTACCTGGGAAAGCTGCAAGCTGGGCGTTATTTCCTGACCTGGGAAGTACCGGGGTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAg                                                                                     <  4:261608/149‑1 (MQ=255)                                                               tgctgATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGc                                                                                    >  5:12899/1‑149 (MQ=255)                                                               ggctgATCCCGACTTGTACATCGCCAAGCTGCAAGCTGCGCGTTATTTCCTCACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCTTTGCTCGTGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGc                                                                                    <  6:273444/148‑1 (MQ=255)                                                                  tgATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggtg                                                                                                  >  1:214647/1‑132 (MQ=255)                                                                              cTACCTCCCCACGATCCACGCTGCTCTTTATTTCCTGCCCTGGTAACTACCGGGATGCCATAATTATCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGTGAGCCACCGTGTACACGGa                                                                     <  8:176181/149‑1 (MQ=255)                                                                                 ccTCGGCAAGCTGAAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTGGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCTCCGTGTACACGGTGG‑c                                                                 <  3:323021/149‑1 (MQ=255)                                                                                       caagctgcaagctgCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGc                                                           <  6:12899/149‑1 (MQ=255)                                                                                           ctgcaagctgcGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGt                                                       >  2:123623/1‑149 (MQ=255)                                                                                                     cgcgTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAg                                             <  4:103137/149‑1 (MQ=255)                                                                                                       cgTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAgcg                                           >  2:78703/1‑149 (MQ=255)                                                                                                                   aCCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTgcgc                                <  1:153727/148‑1 (MQ=255)                                                                                                                    ccTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCa                              <  4:50076/149‑1 (MQ=255)                                                                                                                     cTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAg                             >  6:294301/1‑149 (MQ=255)                                                                                                                               ccGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTtgctg                   >  5:166443/1‑149 (MQ=255)                                                                                                                               ccGGGATGCCATAATGCTCTGGCATTGCTCGAGGCACACGACTATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTtgct                    <  4:114482/148‑1 (MQ=255)                                                                                                                                cccctagaaccacccgtcttGCATTGCTCGAGGCACACGACGATACCTGCCTCgg                                                                                                                 <  2:142733‑M1/35‑1 (MQ=255)                                                                                                                                cccctagaaccacccgtcttGCATTGCTCGAGGCACACGACGATACCTGCCTCgg                                                                                                                 >  1:142733‑M1/21‑55 (MQ=255)                                                                                                                                cGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGGTCATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTtgctg                   <  1:268809/149‑1 (MQ=255)                                                                                                                                       ccATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTTGctgcgctgcg            >  5:137601/1‑148 (MQ=255)                                                                                                                                          tAATGAGCTGGCATTGCTCGAGGCACACGACGATACATGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAg         >  5:273380/1‑148 (MQ=255)                                                                                                                                              gAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACgg    >  1:88147/1‑149 (MQ=255)                                                                                                                                                gCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGcc  <  2:88147/149‑1 (MQ=255)                                                                                                                                                 cTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCctgct                                    <  4:63181/114‑1 (MQ=255)                                                                                                                                                 cTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCctgct                                    >  3:63181/1‑114 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCC  >  NC_002947/5637232‑5637523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.