New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5637379 =	47 (0.800)	3 (0.050)	3/250	NT	6.4%	coding (1747/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	5637419 =	42 (0.740)					coding (1787/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

GGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTCGCACCAGGCGC  >  NC_002947/5637274‑5637566                                                                                                                                                  |                                                                                                                                                      ggccgtactgcgcagcgcagcaaagcgctggcgcagcagggcgctggaatcgaacatgcggatgcctccgtgtacacggtggctccccctagaaccacccgtcttGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGa                                                                                                                                                    >  3:19639‑M1/106‑149 (MQ=255)     tGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGTTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACggg                                                                                                                                                <  8:76606/149‑1 (MQ=255)      gCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggt                                                                                                                                               >  8:20728/1‑149 (MQ=255)       cTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggtg                                                                                                                                              <  7:343466/149‑1 (MQ=255)       cTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggt                                                                                                                                               <  7:77780/148‑1 (MQ=255)         cAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggtggt                                                                                                                                            >  3:103137/1‑149 (MQ=255)             ggAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGAc                                                                                                                                                   >  8:341791/1‑138 (MQ=255)             ggAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGAc                                                                                                                                                   <  7:341791/138‑1 (MQ=255)                 cGGCTGCTTATCGCGAATTCTACCTGGGCAAGCTGAAAGGTGCGCGTTATTTCCTGACCTGGGAATTACCGGGCTGCCAAAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAgggg                                                                                                                                    <  8:310020/149‑1 (MQ=255)                   gctgctGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGa                                                                                                                                  <  6:147575/149‑1 (MQ=255)                    ctgctgATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAg                                                                                                                                 <  7:20728/149‑1 (MQ=255)                    ctgcggATCGCGACTTCTACCTGGGAAAGCTGCAAGCTGGGCGTTATTTCCTGACCTGGGAAGTACCGGGGTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAg                                                                                                                                 <  4:261608/149‑1 (MQ=255)                     tgctgATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGc                                                                                                                                >  5:12899/1‑149 (MQ=255)                     ggctgATCCCGACTTGTACATCGCCAAGCTGCAAGCTGCGCGTTATTTCCTCACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCTTTGCTCGTGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGc                                                                                                                                <  6:273444/148‑1 (MQ=255)                        tgATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGggtg                                                                                                                                              >  1:214647/1‑132 (MQ=255)                                    cTACCTCCCCACGATCCACGCTGCTCTTTATTTCCTGCCCTGGTAACTACCGGGATGCCATAATTATCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGTGAGCCACCGTGTACACGGa                                                                                                                 <  8:176181/149‑1 (MQ=255)                                       ccTCGGCAAGCTGAAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTGGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCTCCGTGTACACGGTGG‑c                                                                                                             <  3:323021/149‑1 (MQ=255)                                             caagctgcaagctgCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGc                                                                                                       <  6:12899/149‑1 (MQ=255)                                                 ctgcaagctgcGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGt                                                                                                   >  2:123623/1‑149 (MQ=255)                                                           cgcgTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAg                                                                                         <  4:103137/149‑1 (MQ=255)                                                             cgTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAg‑cg                                                                                      >  2:78703/1‑149 (MQ=255)                                                                         aCCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTgcgc                                                                           <  1:153727/148‑1 (MQ=255)                                                                          ccTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCa                                                                         <  4:50076/149‑1 (MQ=255)                                                                           cTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAg                                                                        >  6:294301/1‑149 (MQ=255)                                                                                     ccGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTtgctg                                                              >  5:166443/1‑149 (MQ=255)                                                                                     ccGGGATGCCATAATGCTCTGGCATTGCTCGAGGCACACGACTATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTtgct                                                               <  4:114482/148‑1 (MQ=255)                                                                                      cGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGGTCATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTtgctg                                                              <  1:268809/149‑1 (MQ=255)                                                                                             ccATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGctgcgctgcg                                                       >  5:137601/1‑148 (MQ=255)                                                                                                tAATGAGCTGGCATTGCTCGAGGCACACGACGATACATGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAg                                                    >  5:273380/1‑148 (MQ=255)                                                                                                    gAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACgg                                               >  1:88147/1‑149 (MQ=255)                                                                                                      tcttgcatgccgaggcaggtatcgtcgtgtgcctcgagcaatgcAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGcc                                             >  3:19639‑M2/45‑149 (MQ=255)                                                                                                      gCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGcc                                             <  2:88147/149‑1 (MQ=255)                                                                                                       cTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCctgct                                                                               >  3:63181/1‑114 (MQ=255)                                                                                                       cTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCctgct                                                                               <  4:63181/114‑1 (MQ=255)                                                                                                               gCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGTTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAgttgtt                                     <  1:71037/148‑1 (MQ=255)                                                                                                               gCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAgttgtt                                     <  1:78703/148‑1 (MQ=255)                                                                                                               ccgaggcaggtatcgtcgtgtgcctcgagcaatgcAAGACGGGTGGTTCTAgggg                                                                                                                                    >  1:142733‑M2/36‑55 (MQ=255)                                                                                                               ccgaggcaggtatcgtcgtgtgcctcgagcaatgcAAGACGGGTGGTTCTAgggg                                                                                                                                    <  2:142733‑M2/20‑1 (MQ=255)                                                                                                                       cacaCGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTgcg                            >  5:312764/1‑149 (MQ=255)                                                                                                                        acacGACGTTACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTgcgc                           >  3:264589/1‑149 (MQ=255)                                                                                                                          acgacgATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGcc                          >  8:170179/1‑148 (MQ=255)                                                                                                                           cgacgaTACGTGCCTCGGCATGCTAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCAt                        <  7:170179/149‑1 (MQ=255)                                                                                                                             acgaTACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCAtgt                      >  8:160195/1‑149 (MQ=255)                                                                                                                                    cTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTcc                                 >  1:329350/1‑131 (MQ=255)                                                                                                                                    cTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTcc                                 <  2:329350/131‑1 (MQ=255)                                                                                                                                      gCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTc             >  3:303021/1‑149 (MQ=255)                                                                                                                                       ccTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGt              <  6:273380/147‑1 (MQ=255)                                                                                                                                       ccTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTCg            >  4:19848/1‑149 (MQ=255)                                                                                                                                                gcAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTCGCACCAGgcg   >  7:20065‑M2/3‑149 (MQ=255)                                                                                                                                                  aaGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGGATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTCGCACCa       <  2:232711/143‑1 (MQ=255)                                                                                                                                                  aaGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAGCCTGCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTCGCACCAGgcgc  >  1:111355/1‑149 (MQ=255)                                                                                                                                                  aaGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTCGCACCa       >  1:232711/1‑143 (MQ=255)                                                                                                                                                  |                                                                                                                                                      GGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTCTAGGGGGAGCCACCGTGTACACGGAGG‑CATCCGCATGTTCGATTCCAG‑CGCCCTGCTGCGCCAGCGCTTTGCTGCGCTGCGCAGTACGGCCGAGTTGTTTTCCCTGCGCCATGTGAAACAGTCGCACCAGGCGC  >  NC_002947/5637274‑5637566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.