New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5759402	24 (0.410)	4 (0.070)	4/256	NT	14.6%	intergenic (+11/+145)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759496	23 (0.390)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB

CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGG  >  NC_002947/5759260‑5759474                                                                                                                                               |                                                                         cTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAAGCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCgg                                                                     <  1:337215/148‑1 (MQ=255) cTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCggg                                                                    >  2:230719/1‑149 (MQ=255) cTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCgg                                                                     >  2:337215/1‑148 (MQ=255)        gCCTGCCGGCCGAGCATCGCGTGCGCCTGCCGATGCGGCCTGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTc                                                             <  2:346981/149‑1 (MQ=255)        gCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTc                                                             <  7:325254/149‑1 (MQ=255)               ggccgAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGAGGGt                                                       >  8:14924/1‑148 (MQ=255)                 ccgAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTat                                                     >  1:140316/1‑147 (MQ=255)                   gAGCATCGGCTTCTCCTGCGTATGCGGCCGGGGTGGCGTAGCGTGTACGTGTCCAATACGGGTGCGGTGTCGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGGCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAcc                                                  <  3:268580/149‑1 (MQ=255)                   gAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACTGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAcc                                                  <  6:176797/149‑1 (MQ=255)                    aGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAccc                                                 <  6:76898/149‑1 (MQ=255)                     gCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCGGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCg                                                >  4:16328/1‑149 (MQ=255)                                  ctgcCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCGGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGc                                   <  3:16328/149‑1 (MQ=255)                                   tgcCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAccc                                                 >  1:207577/1‑134 (MQ=255)                                   tgcCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAccc                                                 <  2:207577/134‑1 (MQ=255)                                       gATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAgg                              <  7:14924/149‑1 (MQ=255)                                              ccGGGGTGCCGTAGCCTGACCCTGTCCAATACGGTGGCGGGGACGGTGGATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGgc                       <  8:170936/149‑1 (MQ=255)                                                             cTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAg         <  8:328005/148‑1 (MQ=255)                                                             cTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAg         >  7:328005/1‑148 (MQ=255)                                                                   cTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg  <  6:321620/149‑1 (MQ=255)                                                                   cTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg  <  1:230719/149‑1 (MQ=255)                                                                         aaTACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGcgcgggcctcttcgcgggtaaacccgctcctacaggggattgcgccgttccctcggcctgcgtaggagc     <  6:125003‑M1/140‑70 (MQ=255)                                                                         aaTACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCGGcgcgggcctcttcgcgggtaaacccgctcctacaggggattgcgccgttccctcggcctgcgtaggagc     >  5:125003‑M1/1‑71 (MQ=255)                                                                                tGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAgg                              <  3:132805/108‑1 (MQ=255)                                                                                tGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAgg                              >  4:132805/1‑108 (MQ=255)                                                                                       gACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCgg                                                         >  7:319985/1‑74 (MQ=255)                                                                                       gACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCgg                                                         <  8:319985/74‑1 (MQ=255)                                                                                           gtgtATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGcgcgggcctcttcgcgggtaaacccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgg   <  2:346980‑M1/124‑72 (MQ=255)                                                                                           gtgtATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGcgcgggcctcttcgcgggtaaacccgctcctacaggggattgcgccgttccctcggcctgcgtaggagcgg   >  1:346980‑M1/1‑53 (MQ=255)                                                                                                            gcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTa                                          >  4:64783/1‑68 (MQ=255)                                                                                                            gcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTa                                          <  3:64783/68‑1 (MQ=255)                                                                                                                                               |                                                                         CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGG  >  NC_002947/5759260‑5759474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.