New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5759402	24 (0.410)	4 (0.070)	4/256	NT	14.6%	intergenic (+11/+145)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759496	23 (0.390)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB

TAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCGGG  >  NC_002947/5759421‑5759643                                                                            |                                                                                                                                                     tAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCAc                                                                            >  1:320706/1‑149 (MQ=255)    aCCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaaaa                                                                                                                                        <  4:241145/87‑1 (MQ=255)    aCCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaaaa                                                                                                                                        >  3:241145/1‑87 (MQ=255)      ccGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGcaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacac                                                                                                 >  1:346980‑M2/1‑71 (MQ=255)      ccGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGcaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacac                                                                                                 <  2:346980‑M2/124‑54 (MQ=255)      ccGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCt                                                                       >  5:158248/1‑149 (MQ=255)        gCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGccggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccaccgtatt                                                                               >  5:125003‑M2/1‑69 (MQ=255)        gCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGcaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccaccgtatt                                                                               <  6:125003‑M2/140‑72 (MQ=255)           ccTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGca‑ca                                                                                         <  8:303707/126‑1 (MQ=255)           ccTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGca‑ca                                                                                         >  7:303707/1‑126 (MQ=255)                gCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATAc                                                             >  5:208938/1‑149 (MQ=255)                      cGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCG‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCa                                                       >  5:33196/1‑149 (MQ=255)                            aaCGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCtt                                                 >  3:303751/1‑149 (MQ=255)                                gcgcAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgcgc                                             <  6:158248/149‑1 (MQ=255)                                         ccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGc                                    >  6:307978/1‑149 (MQ=255)                                          cTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCg                                   >  2:285486/1‑149 (MQ=255)                                              aGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCg                                >  5:182923/1‑148 (MQ=255)                                               ggAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGaa                              <  4:303751/149‑1 (MQ=255)                                                 aGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGt                            <  2:320706/149‑1 (MQ=255)                                                 aGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGt                            <  5:307978/149‑1 (MQ=255)                                                   cGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGtt                           >  2:367662/1‑148 (MQ=255)                                                            ccGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGa                  >  1:271047/1‑148 (MQ=255)                                                                gAATAGGCCCGCGCCGGCAACAAAAAACCGCCCCGATAGGCGGTTTCTTGAAACCGGCAGTAATTACTGCATCAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCa                                                       <  1:247493/108‑1 (MQ=255)                                                                gAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCa                                                       >  2:247493/1‑107 (MQ=255)                                                                      gCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGaa                              <  7:179657/126‑1 (MQ=255)                                                                      gCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGaa                              >  8:179657/1‑126 (MQ=255)                                                                      gCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAgcg       >  8:231865/1‑149 (MQ=255)                                                                         cgcgCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTAGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGAATACGCTGCAGTTCTTGCGGGTACAGGGCGTCGAAGTTGACCGCCGACAGCATCAGCGCCg    >  7:133786/1‑149 (MQ=255)                                                                          gcgcCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCT‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCgg   <  6:33196/149‑1 (MQ=255)                                                                           cgcCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCggg  <  2:271047/149‑1 (MQ=255)                                                                            |                                                                                                                                                     TAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCA‑CAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCGGG  >  NC_002947/5759421‑5759643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.