New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 570780	52 (0.880)	4 (0.070)	4/250	NT	7.7%	coding (1156/1395 nt)	yajR	transporter
	?	NC_002947	= 570808	46 (0.810)					coding (1184/1395 nt)	yajR	transporter

CACCAGCCAGTTCCTCGGTGCAGCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCATCTATATCAAACTGGATACGAA  >  NC_002947/570668‑570955                                                                                                                                             |                                                                                                                                                    caccaGCCAGTTCCTCGGTGCAGCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCatat                                                                                                                                              <  7:145047/148‑1 (MQ=255)   ccagccagTTCCTCGGTGCAGCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATAtgt                                                                                                                                            >  1:262677/1‑148 (MQ=255)         agTTCCTCGGTGCAGCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGc                                                                                                                                     >  5:31170/1‑149 (MQ=255)         agTTCCTCGGTGCAGCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGc                                                                                                                                     <  6:31170/149‑1 (MQ=255)              cTCGGTGCAGCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGCTCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTgcg                                                                                                                                >  7:170930/1‑149 (MQ=255)                       gCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCtt                                                                                                                       <  2:87325/149‑1 (MQ=255)                                gggATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCt                                                                                                                >  1:356613/1‑147 (MQ=255)                                  gATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAgg                                                                                                            >  3:269613/1‑149 (MQ=255)                                    ttCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTgcgc                                                                                                                               <  1:95753/128‑1 (MQ=255)                                    ttCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTgcgc                                                                                                                               >  2:95753/1‑128 (MQ=255)                                       ttGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGccc                                                                                                                         <  2:29690/131‑1 (MQ=255)                                       ttGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGccc                                                                                                                         >  1:29690/1‑131 (MQ=255)                                         ggcggcTGCCAGATCCAGCACGGCGGGCTGAACACGCTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTCGCTGATCGTCGCCTTGAGCATGAACGAGCCCCCATATGTGACCAGCCTCCGCATGCCCTTGACGCCTGAGGCGCTCCg                                                                                                     >  4:199880/1‑149 (MQ=255)                                             gctggctgTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGaa                                                                                                 <  6:144912/149‑1 (MQ=255)                                                    gTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCtt                                                                                                                       >  4:40090/1‑120 (MQ=255)                                                    gTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCtt                                                                                                                       <  3:40090/120‑1 (MQ=255)                                                        cAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCggg                                                                                                   <  5:59240/136‑1 (MQ=255)                                                        cAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCggg                                                                                                   >  6:59240/1‑136 (MQ=255)                                                        cAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCg                                                                                                     >  6:89208/1‑134 (MQ=255)                                                        cAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCg                                                                                                     <  5:89208/134‑1 (MQ=255)                                                             cggcggGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAgc                                                                                 <  2:262677/149‑1 (MQ=255)                                                                  ggCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCt                                                                             >  7:104211/1‑148 (MQ=255)                                                                   gCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGa                                                                           <  3:137126/149‑1 (MQ=255)                                                                       aaCACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGc                                                                       >  5:335188/1‑149 (MQ=255)                                                                               gtTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAgg                                                                                                            >  2:202653/1‑104 (MQ=255)                                                                               gtTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAgg                                                                                                            <  1:202653/104‑1 (MQ=255)                                                                                ttCCTCGGTAGCGCGGTGCTGTGTTCTATCTGGCTGTTCGGCGCCTTGCGCATGTACGAGCCGCCATATGTGACCCGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCgg                                                               <  3:199880/148‑1 (MQ=255)                                                                                 tCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGgt                                                             <  8:170930/149‑1 (MQ=255)                                                                                  ccTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGgtg                                                            >  3:274723/1‑149 (MQ=255)                                                                                  ccTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGgt                                                             <  4:269613/148‑1 (MQ=255)                                                                                   cTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGgtgt                                                           <  8:104211/149‑1 (MQ=255)                                                                                   cTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGgtgt                                                           <  2:98498/149‑1 (MQ=255)                                                                                   cTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGAAGGCCGTGCCGGgtgt                                                           >  3:270505/1‑149 (MQ=255)                                                                                   cTCGGTAGCGCGGTGCTGTGTGCTAACTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCCCCTGATGGCCGTGCCGGgtgt                                                           >  5:201782/1‑149 (MQ=255)                                                                                    tCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGtgtg                                                          >  6:251903/1‑149 (MQ=255)                                                                                       gTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGAcc                                                       >  6:196340/1‑149 (MQ=255)                                                                                          gcgcGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGa                                                     <  1:225265/148‑1 (MQ=255)                                                                                                  cTGGGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGGCGCCATATGTGACCAGCCTGCGGATGGCCTTGACGCCTGAGGCGGTGCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGTGTGTGACCGACGGTgtggt                                            <  6:201782/149‑1 (MQ=255)                                                                                                     tgtgCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCgccagatagcacacagcaccgcgctgccgaggaacaccgtgttcagcccgccgtgctggaacagccagccgccaagaatcccgcctaacgctgcaccgaggaact                                            >  4:44553‑M2/1‑41 (MQ=255)                                                                                                     tgtgCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCgccagatagcacacagcaccgcgctgccgaggaacaccgtgttcagcccgccgtgctggaacagccagccgccaagaatcccgcctaacgctgcaccgaggaact                                            <  3:44553‑M2/146‑106 (MQ=255)                                                                                                       tgCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTgtggtggtg                                        >  7:125475/1‑148 (MQ=255)                                                                                                       tgCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGtggtggtgg                                       <  6:185498/149‑1 (MQ=255)                                                                                                         cTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCgccagatagcacacagcaccgcgctaccgaggaacaccgtgttcagcccgccgtgctggaacagccagccgccaagaatcccgcctaacgctgcaccgaggaactggctggt                                     <  2:347988‑M2/149‑113 (MQ=255)                                                                                                           aTCTGGCTGATCGTCGACTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGgaag                                    >  6:224018/1‑148 (MQ=255)                                                                                                              tGGCTGATCGTCGCCTTGCGCATGAACGCGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCgg                                                               >  4:100552/1‑118 (MQ=255)                                                                                                              tGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCgg                                                               <  3:100552/118‑1 (MQ=255)                                                                                                                       gtcgCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCAt                       <  4:274723/149‑1 (MQ=255)                                                                                                                          gCCTTGCGCATGAACGAGCCgccagatagcacacagcaccgcgctaccgaggaacaccgtgttcagcccgccgtgctggaacagccagccgccaagaatcccgcctaacgctgcaccgaggaactggctggtggaatacacccccatt                     >  1:347988‑M2/1‑20 (MQ=255)                                                                                                                             ttGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCATCTatat                 >  2:186978/1‑149 (MQ=255)                                                                                                                               gcgcATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCAGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCATCTATATc                >  7:60235/1‑148 (MQ=255)                                                                                                                                  cATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCATCTATATCAAAc            >  5:16624/1‑149 (MQ=255)                                                                                                                                       aCGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCATCAATATCAAACTGGa        >  7:135677/1‑148 (MQ=255)                                                                                                                                             cgccATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCATCTATATCAAACTGGATACGaa  >  2:116009/1‑148 (MQ=255)                                                                                                                                             |                                                                                                                                                    CACCAGCCAGTTCCTCGGTGCAGCGTTAGGCGGGATTCTTGGCGGCTGGCTGTTCCAGCACGGCGGGCTGAACACGGTGTTCCTCGGTAGCGCGGTGCTGTGTGCTATCTGGCTGATCGTCGCCTTGCGCATGAACGAGCCGCCATATGTGACCAGCCTGCGCATGCCCTTGACGCCTGAGGCGGTCCGGGAAGCCGGCCTGACCGAGCGCCTGATGGCCGTGCCGGGTGTGACCGACGCTGTGGTGGTGGAAGAAGAAGCCGCCATCTATATCAAACTGGATACGAA  >  NC_002947/570668‑570955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.