New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1034742 =40 (0.680)3 (0.050) 3/248 NT 6.8% coding (779/1158 nt) PP_0892 phospholipase family protein
?NC_002947 1034782 = 44 (0.780)coding (819/1158 nt) PP_0892 phospholipase family protein

CGGGTGTGGCTGGCCACGCCGTACTTCTTGCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGACCACTGGAACTTGCGCTTC  >  NC_002947/1034642‑1034923
                                                                                                                                             |                                                                                                                                             
cGGGTGTGGCTGGCCACGCCGTACTTCTTGCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTta                                                                                                                                       <  8:210617/149‑1 (MQ=255)
 gggTGTGGCTGGCCACGCCGTACTTCTTGCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCg                                                                                                                                          >  1:243904/1‑145 (MQ=255)
 gggTGTGGCTGGCCACGCCGTACTTCTTGCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCg                                                                                                                                          <  2:243904/145‑1 (MQ=255)
        gctggcCACGCCGTACTTCTTGCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCcgc                                                                                                                               >  6:42795/1‑149 (MQ=255)
               aCGCCGTACTTCTTGCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGtt                                                                                                                        <  3:271941/149‑1 (MQ=255)
                cacagccatcttcaggtgcaggaagcacggctggtactcgaaaatccgtacgcccgcgcgcaacagacgcgggtagtaacgatgcCCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGtt                                                                                                                                        >  4:156750‑M1/86‑133 (MQ=255)
                cacagccatcttcaggtgcaggaagcacggctggtactcgaaaatccgtacgcccgcgcgcaacagacgcgggtagtaacgatgcCCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGtt                                                                                                                                        <  3:156750‑M1/48‑1 (MQ=255)
                             gCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCg                                                                                                             <  1:257968/146‑1 (MQ=255)
                                gACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTta                                                                                                                                       >  4:93393/1‑117 (MQ=255)
                                gACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTta                                                                                                                                       <  3:93393/117‑1 (MQ=255)
                                   cTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGAttt                                                                                                    >  7:139556/1‑149 (MQ=255)
                                       aGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGa                                                                                                <  3:369878/149‑1 (MQ=255)
                                          gTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTa                                                                                             <  3:138952/149‑1 (MQ=255)
                                              gcCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTc                                                                                                  <  4:141459/140‑1 (MQ=255)
                                              gcCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTc                                                                                                  >  3:141459/1‑140 (MQ=255)
                                                cGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGc                                                                                                                                              <  7:280681/94‑1 (MQ=255)
                                                cGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGc                                                                                                                                              >  8:280681/1‑94 (MQ=255)
                                                     gTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCt                                                                                  >  4:348775/1‑149 (MQ=255)
                                                        gcgcCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTc                                                                                <  5:42795/148‑1 (MQ=255)
                                                          gcCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTc                                                                                >  3:322398/1‑146 (MQ=255)
                                                          gcCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTc                                                                                <  4:322398/146‑1 (MQ=255)
                                                          gcCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTg                                                                             <  8:319334/149‑1 (MQ=255)
                                                                 tGCCAGCAAGGGCCTGGACGTGCGTCTGTGTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTa                                                                                                           >  1:216324/1‑113 (MQ=255)
                                                                 tGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTa                                                                                                           <  2:216324/112‑1 (MQ=255)
                                                                     aGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGAt                                                                  <  2:232682/149‑1 (MQ=255)
                                                                      gCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATg                                                                 >  8:201853/1‑149 (MQ=255)
                                                                        aaGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGc                                                               >  5:197767/1‑149 (MQ=255)
                                                                            gCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCtgtg                                                           <  1:238095/149‑1 (MQ=255)
                                                                              cTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCAGCCGTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCTCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTgg                                                          <  6:18822/148‑1 (MQ=255)
                                                                              cTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACACCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTgg                                                          >  5:18822/1‑148 (MQ=255)
                                                                                             aacgatgcccggcgtagcgtaccgaggggtgatcggtacgcgggccggGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCtgtg                                                           >  4:156750‑M2/49‑133 (MQ=255)
                                                                                             aacgatgcccggcgtagcgtaccgaggggtgatcggtacgcgggccggGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCtgtg                                                           <  3:156750‑M2/85‑1 (MQ=255)
                                                                                                gttgACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCg                                        >  1:354133/1‑149 (MQ=255)
                                                                                                    aCCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAgac                                                     >  3:361842/1‑132 (MQ=255)
                                                                                                    aCCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAgac                                                     <  4:361842/132‑1 (MQ=255)
                                                                                                     ccggcgtagcgtaccgaggggtgatcggtacgcgggccggGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGt                                   >  6:305252‑M2/41‑149 (MQ=255)
                                                                                                      CGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCAc                                                                          >  1:342644‑M1/1‑109 (MQ=255)
                                                                                                      CGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCAc                                                                          <  2:342644‑M1/109‑1 (MQ=255)
                                                                                                      CGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGtt                                  >  6:197767‑M1/1‑149 (MQ=255)
                                                                                                       GGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTc                                 >  8:139556‑M1/1‑149 (MQ=255)
                                                                                                         CCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGt                               >  3:367589‑M1/1‑149 (MQ=255)
                                                                                                          ccGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGGGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTg                              <  3:348775/149‑1 (MQ=255)
                                                                                                           cgcgTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTc                                                                                                  <  8:71126/80‑1 (MQ=255)
                                                                                                             cgTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCaa                           <  2:354133/149‑1 (MQ=255)
                                                                                                                aCCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACtt                        >  2:47583/1‑149 (MQ=255)
                                                                                                                  cGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTgg                                                          >  1:325193/1‑113 (MQ=255)
                                                                                                                  cGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTgg                                                          <  2:325193/113‑1 (MQ=255)
                                                                                                                   gATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGa                     >  7:103836/1‑149 (MQ=255)
                                                                                                                    aTCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGAc                    >  6:214627/1‑149 (MQ=255)
                                                                                                                        ccccTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGACCACt                <  8:103836/149‑1 (MQ=255)
                                                                                                                         cccTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTa                                                                                             >  6:217207/1‑71 (MQ=255)
                                                                                                                         cccTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTa                                                                                             <  5:217207/71‑1 (MQ=255)
                                                                                                                         cccTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCAc                                                                          <  5:240985/90‑1 (MQ=255)
                                                                                                                         cccTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCAc                                                                          >  6:240985/1‑90 (MQ=255)
                                                                                                                         cccTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGACCACTg               >  1:311020/1‑149 (MQ=255)
                                                                                                                           cTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGACCACTgg              >  2:153798/1‑148 (MQ=255)
                                                                                                                                      gggccggGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGACCACTGGAACTTGCGCTTc  <  5:305252‑M2/142‑1 (MQ=255)
                                                                                                                                       cgcCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGt                                   >  3:270054/1‑115 (MQ=255)
                                                                                                                                       cgcCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGt                                   <  4:270054/115‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                             
CGGGTGTGGCTGGCCACGCCGTACTTCTTGCCGACCTGGAGCGTGCGCCGGTCGTTGCGCCGGGCTGCCAGCAAGGGCCTGGACGTGCGTCTGTTGTTGACCGGCCCGCGTACCGATCACCCCTCGGTACGCTACGCCGGGCATCGTTACTACCCGCGTCTGTTGCGCGCGGGCGTACGGATTTTCGAGTACCAGCCGTGCTTCCTGCACCTGAAGATGGCTGTGGTAGACGACTGGGTCAGCGTCGGTTCGTGCAACTTCGACCACTGGAACTTGCGCTTC  >  NC_002947/1034642‑1034923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.