New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1206083	50 (0.850)	4 (0.070)	4/248	NT	8.3%	coding (2918/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	= 1206115	40 (0.710)					coding (2886/3150 nt)	PP_1058	hypothetical protein

AGCACCTGCACCGGCAGCGCCGAGGTAAATTTGAACGCTTCTGCCGTGCGACCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATGGCGCCTTTGAG  >  NC_002947/1205969‑1206261                                                                                                                                                   |                                                                                                                                                   aGCACCTGCACCGGCAGCGCCGAGGTAAATTTGAACGCTTCTGCCGTGCGACCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGcc                                                                                                                                                  >  3:281177‑M2/1‑147 (MQ=255)  gCACCTGAACCGGCAGCGCCGATGTAAATGTGAACGCTTCTGCCGTGCGACCCGGCACGATGGCGGTCAGCGTGCCGAAAAGGTTCTCGCCTAGGAAGAAGCCGAAGGGGGCGGTGCGTGTCAGCGAGCGCGAGCCGATCCgccggccg                                                                                                                                                 >  6:286292/1‑149 (MQ=255)                          tAAATTTGAACGCTTCTGCCGTGCGACCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCgg                                                                                                                         >  1:99506/1‑149 (MQ=255)                            aaTTTGAACGCTTCTGCCGTGCGACCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCATGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGtt                                                                                                                       >  1:8145/1‑149 (MQ=255)                                  aaCGCTTCTGCCGTGCGACCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCacc                                                                                                                 >  2:12087/1‑149 (MQ=255)                                             cGTGCGACCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCt                                                                                                      >  3:216181/1‑149 (MQ=255)                                                   aCCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACAGGTACCGGTCTTgccgc                                                                                                >  3:247905/1‑149 (MQ=255)                                                     ccGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCtt                                                                                                     <  5:276533/142‑1 (MQ=255)                                                     ccGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCtt                                                                                                     >  6:276533/1‑142 (MQ=255)                                                      cGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCa                                                                                             >  8:4449/1‑149 (MQ=255)                                                       ggCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCAt                                                                                            <  2:99506/149‑1 (MQ=255)                                                          aCGAAGGCGGTCAGCGTGCCGAAATGGTTGTAGACAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCAc                                                                                         >  3:62473/1‑149 (MQ=255)                                                            gAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCTCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCa                                                                                       <  5:286292/149‑1 (MQ=255)                                                                              gAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTg                                                                       >  8:211852/1‑147 (MQ=255)                                                                                   ggTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCtt                                                                 >  2:186464/1‑148 (MQ=255)                                                                                    gTTGTCGCCAAGGAAGAACTCGAATGTGGCGGTGCGGTTCAGGGAGCGCGAGCCGAACAGCCGGCCGCGGGCGCCAAAGCTCTCGATTCGGTTGTGACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTg                                                                <  2:117490/148‑1 (MQ=255)                                                                                          gCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTTCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGc                                                         <  1:12087/149‑1 (MQ=255)                                                                                           ccAAGGAAGCACACGCAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCGCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGcc                                                        <  6:91958/149‑1 (MQ=255)                                                                                           ccAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTg                                                                <  3:246546/141‑1 (MQ=255)                                                                                           ccAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTg                                                                >  4:246546/1‑141 (MQ=255)                                                                                           ccAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGcc                                                        >  3:226362/1‑149 (MQ=255)                                                                                                gaagaaCACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCg                                                       <  7:191287/145‑1 (MQ=255)                                                                                                gaagaaCACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCg                                                       >  8:191287/1‑145 (MQ=255)                                                                                                gaagaaCACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGaaa                                                   <  2:300358/149‑1 (MQ=255)                                                                                                  agaaCACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATa                                                 >  5:296789/1‑149 (MQ=255)                                                                                                    aaCACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGa                                                     >  8:333683/1‑143 (MQ=255)                                                                                                    aaCACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGa                                                     <  7:333683/143‑1 (MQ=255)                                                                                                    aaCACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATAcg                                               >  2:371181/1‑149 (MQ=255)                                                                                                     acacGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATAcgc                                              >  1:202311/1‑149 (MQ=255)                                                                                                      cacGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATAcg                                               >  6:221033/1‑147 (MQ=255)                                                                                                       acGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGccgccaccttcgtgttcttccttggcgacaaccatttcggcacgctgaccgccttcgtgccgggtcgcacggcagaagcgttcaaatttacctcggcgctgccg                                            <  8:58365‑M2/149‑105 (MQ=255)                                                                                                           aGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGccgccaccttcgtgttcttccttggcgacaaccatttcggcacgctgaccgccttcgtgccgggtcgcacggcagaagcgttcaaatttacctcggcgctgccggtg                                         <  3:3895‑M2/148‑108 (MQ=255)                                                                                                                gcggtgcggtTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTAc                                    <  5:1208/148‑1 (MQ=255)                                                                                                                 cggtgcggtTCAGCGAGCGCGAGCCGATCAGCCGGccgccaccttcgtgttcttccttggcgacaaccatttcggcacgctgaccgccttcgtgccgggtcgcacggcagaagcgttcaaatttacctcggcgctgccggtgcaggtgc                                  >  7:58365‑M2/1‑35 (MQ=255)                                                                                                                         ttCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGAc                          >  8:61674/1‑149 (MQ=255)                                                                                                                         ttCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGAc                          <  7:4449/149‑1 (MQ=255)                                                                                                                         ttCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGAc                          <  6:296789/149‑1 (MQ=255)                                                                                                                            agcgagcgCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCATCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGGATCGACCAc                       <  2:8145/149‑1 (MQ=255)                                                                                                                                 gcgcgagcCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGc                   >  2:206977/1‑148 (MQ=255)                                                                                                                                  cgcgagcCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGa                 <  4:216181/149‑1 (MQ=255)                                                                                                                                   gcgagcCGATCAGCCGGccgccaccttcgtgttcttccttggcgacaaccatttcggcacgctgaccgccttcgtgccgggtcgcacggcagaagcgttcaaatttacctcggcgctgccggtgcaggtgctcaagggcatggcaccga                >  4:3895‑M2/1‑17 (MQ=255)                                                                                                                                       gcCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATgg            <  5:221033/149‑1 (MQ=255)                                                                                                                                       gcCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATgg            >  5:102413/1‑149 (MQ=255)                                                                                                                                        ccGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATGgc           >  6:131397/1‑149 (MQ=255)                                                                                                                                          gATCAGCCGGCCTCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCAGCCCATCACCATCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATGgcgc         <  4:62473/149‑1 (MQ=255)                                                                                                                                              aGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATGGCGCCttt     <  2:202311/149‑1 (MQ=255)                                                                                                                                                ccggccgCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATGGCGCCTTTGa   <  7:211852/149‑1 (MQ=255)                                                                                                                                                 cggccgCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATGGCGCCTTTGAg  <  1:186464/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   AGCACCTGCACCGGCAGCGCCGAGGTAAATTTGAACGCTTCTGCCGTGCGACCCGGCACGAAGGCGGTCAGCGTGCCGAAATGGTTGTCGCCAAGGAAGAACACGAAGGTGGCGGTGCGGTTCAGCGAGCGCGAGCCGATCAGCCGGCCGCCGGCGCCAAAGCTCTCGATTCGGTTGTCACCGGTACCGGTCTTGCCGCCCATCACCAGCGGCGTGCCGTCCTGCAGCTTGAAACTGCCGGAAATACGCCGCGCGGTACCTGCATCGACCACTTGCGACATGGCGCCTTTGAG  >  NC_002947/1205969‑1206261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.