New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1426326	NA (NA)	5 (0.090)	3/250	NT	100%	coding (224/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426369	0 (0.000)					coding (267/1422 nt)	PP_1250	group II intron‑encoding maturase

TCAGCAACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCCTGA  >  NC_002947/1426320‑1426517                                                  |                                                                                                                                                     tCAGCAACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtc                                                                  >  3:161412‑M2/1‑50 (MQ=255) tCAGCAACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtc                                                                  <  4:161412‑M2/134‑85 (MQ=255)      aacaaGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtcc                                                                 >  6:82014‑M2/1‑45 (MQ=255)           gggAGCACCGGGTGCCGATGGCATGACGGT‑GCTCCCTTGttgctgaccacacgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtccacgtcacggacgccgtcgatacctt                                        <  2:277526‑M2/149‑111 (MQ=255)                   cGGGTGCCGATGGCATGACGGT‑GCTCCCTTGttgctgaccacacgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtccacgtcacggacgccgtcgatacctttgcactg                                 <  7:126247‑M2/148‑118 (MQ=255)                                               cTTGttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtccacgtcacggacgccgtcgatacctttgcactgtcaggagtcacccacggctgctgcccg      <  6:261947‑M2/148‑145 (MQ=255)                                                ttgttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtccacgtcacggacgccgtcgatacctttgcactgtcaggcgtcaccctcggcttctggccgga    >  8:270567‑M2/1‑3 (MQ=255)                                                  gttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtccacgtcacggacgccgtcgatacctttgcactgtcaggcgtcaccctcggcttctggccggagc  <  4:247626‑M2/149‑149 (MQ=255)                                                  gttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtccacgtcacggacgccgtcgatacctttgcactgtcaggcgtcaccctcggcttctggccggagc  <  6:134649‑M2/149‑149 (MQ=255)                                                  gttgctgaccacgcgttgatacgcacgtctgaggttggccggtgcaagcacccgctccatcagcgtgtccggctccgcgttcgtccacgtcacggacgccgtcgatacctttgcactgtcaggcgtcaccctcggcttctggccggag   >  3:121716‑M2/1‑1 (MQ=255)                                                  |                                                                                                                                                     TCAGCAACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCCTGA  >  NC_002947/1426320‑1426517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.