New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1687949	48 (0.820)	3 (0.050)	3/246	NT	6.5%	coding (555/912 nt)	ydcU	polyamine ABC transporter permease
	?	NC_002947	= 1687999	41 (0.730)					coding (505/912 nt)	ydcU	polyamine ABC transporter permease

GTTTGCCCTGGCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATC  >  NC_002947/1687851‑1688147                                                                                                                                                     |                                                                                                                                                     gTTTGCCCTGGCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGt                                                                                                                                                      >  3:48372/1‑149 (MQ=255)     gCCCTGGCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTgctg                                                                                                                                                  <  7:297521‑M2/149‑5 (MQ=255)      cccTGGCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTgc                                                                                                                                                    >  4:327036‑M2/1‑144 (MQ=255)      cccTGGCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTgc                                                                                                                                                    <  3:327036‑M2/146‑3 (MQ=255)       ccTGGCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTgctgcc                                                                                                                                                <  3:244480‑M2/149‑7 (MQ=255)        cTGGCCGGGCGCCCAGGTCGGCAAAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGCGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACCCCAGGAACCGCCCCAGGTGTGAAGTCGACAGCGTCCTgccg                                                                                                                                               >  7:57591/1‑149 (MQ=255)           gCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGccc                                                                                                                                            <  7:65668/149‑1 (MQ=255)                    ccAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCgg                                                                                                                                    >  2:336161/1‑148 (MQ=255)                     cAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCa                                                                                                                                  >  4:230306/1‑149 (MQ=255)                       ggTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACg                                                                                                                                <  8:57591/149‑1 (MQ=255)                       ggTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACg                                                                                                                                <  2:179777/149‑1 (MQ=255)                          cGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAATTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGcc                                                                                                                             <  8:332937/149‑1 (MQ=255)                                  gCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGc                                                                                                                     <  3:303504/149‑1 (MQ=255)                                       cagcagCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTg                                                                                                                  <  5:325256/147‑1 (MQ=255)                                        agcagcGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTgcag                                                                                                               <  1:336161/149‑1 (MQ=255)                                          cagcGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTgcagca                                                                                                             <  1:279797/149‑1 (MQ=255)                                          cagcGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTgcag                                                                                                               >  6:233880/1‑147 (MQ=255)                                                  gTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATcc                                                                                                     <  3:230306/149‑1 (MQ=255)                                                    ggCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAg                                                                                                   <  4:244480/149‑1 (MQ=255)                                                            cTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAAct                                                                                           >  3:291676/1‑149 (MQ=255)                                                             tCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGACGCGCCCCAGGTGTGAAGTCGCCAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCCGCAGGCCATCCAGCTGCCActg                                                                                          >  7:317810/1‑149 (MQ=255)                                                             tCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTg                                                                                                                  <  3:307624/125‑1 (MQ=255)                                                             tCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTg                                                                                                                  >  4:307624/1‑125 (MQ=255)                                                             tCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAActg                                                                                          >  4:197344/1‑149 (MQ=255)                                                                  cGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGa                                                                                     <  3:197344/149‑1 (MQ=255)                                                                            aTCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTg                                                                           <  1:349331/149‑1 (MQ=255)                                                                               ggCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGc                                                                        >  7:273115/1‑149 (MQ=255)                                                                                gCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAgg                                                                                                  <  2:49002/122‑1 (MQ=255)                                                                                gCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAgg                                                                                                  >  1:49002/1‑122 (MQ=255)                                                                                gCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGAACGAACCACTgg                                                                          <  2:250383/146‑1 (MQ=255)                                                                                gCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGAACGAACCACTgg                                                                          >  1:250383/1‑146 (MQ=255)                                                                                    gATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCAcgc                                                                   >  2:143573/1‑149 (MQ=255)                                                                                       cATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCAcgccgc                                                                >  8:88842/1‑149 (MQ=255)                                                                                        aTGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTgctgccattcatgatcctgccgatccaggcctcgctggagcgcttgccaccgtcgctgctgcaggcttcggccgacctgggcgcccg                                                               <  4:312835‑M2/149‑88 (MQ=255)                                                                                           aaTGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTgctgccattcatgatcctgccgatccaggcctcgctggagcgctt                                                                                                         <  5:280173‑M2/104‑46 (MQ=255)                                                                                           aaTGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTgctgccattcatgatcctgccgatccaggcctcgctggagcgctt                                                                                                         >  6:280173‑M2/1‑59 (MQ=255)                                                                                            aTGGCAGCCAGAGCGACCCGCACACCAGGCAGCGACCCATGGGTGCAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCAACGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTg                                                           <  8:317810/149‑1 (MQ=255)                                                                                               gCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGcc                                                        <  1:143573/149‑1 (MQ=255)                                                                                                       aTGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCcagcagcag                                                <  4:291676/149‑1 (MQ=255)                                                                                                             acGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTc                                            >  4:243490/1‑147 (MQ=255)                                                                                                               gAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAgg                                        >  3:209650/1‑149 (MQ=255)                                                                                                                     cAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAg                                   <  5:89844/148‑1 (MQ=255)                                                                                                                     cAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAg                                   >  6:89844/1‑148 (MQ=255)                                                                                                                       ggAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTc                                <  3:243490/149‑1 (MQ=255)                                                                                                                        gAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCt                               >  1:223636/1‑149 (MQ=255)                                                                                                                           gcggCCCAGGTGTTAAGTGGTCAGGGTGCTGCCGCCCACGCCCGGCACGGCCAGGACCGCCTGCAGCATGCCATCCAGGTTCAACTGCTGGTCGAACCACTGGGGCACGCCGCCCTTGGCCAGCAGCAGGGTc                                            <  8:352426/133‑1 (MQ=255)                                                                                                                           gcgcCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTc                                            >  7:352426/1‑133 (MQ=255)                                                                                                                           gcgcCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGa                            <  4:48372/149‑1 (MQ=255)                                                                                                                                         aaGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGcc              >  7:137226/1‑149 (MQ=255)                                                                                                                                           gTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCca            <  2:223636/149‑1 (MQ=255)                                                                                                                                           gTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCca            >  4:280506/1‑149 (MQ=255)                                                                                                                                                 aGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCAt                                                                                                       >  2:238998/1‑52 (MQ=255)                                                                                                                                                 aGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCAt                                                                                                       <  1:238998/52‑1 (MQ=255)                                                                                                                                                     tgctgcCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGcatc  <  3:176191/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GTTTGCCCTGGCCGGGCGCCCAGGTCGGCCGAAGCCTGCAGCAGCGACGGTGGCAAGCGCTCCAGCGAGGCCTGGATCGGCAGGATCATGAATGGCAGCCAGATGTACACGAACACCAGGAAGCGCCCCAGGTGTGAAGTCGACAGCGTGCTGCCGCCCACGCCCGGCACGGCCAGCACCGCCTGCAGCAGGCCATCCAGGTGCAACTGCTGGACGAACCACTGGGCCACGCCGCCCTTGGCCAGCAGCAGGGTCCAGGCATAGGTCTTGACGATGTAGCTGGCCCACATCGGCATC  >  NC_002947/1687851‑1688147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.