New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1799873	30 (0.510)	7 (0.140)	7/212	NT	22.0%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799915	25 (0.520)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha

TTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGAATTCTCGCT  >  NC_002947/1799767‑1800063                                                                                                                                                      |                                                                                                                                                     ttCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTgg                                                                                                                                                      <  3:180975/149‑1 (MQ=255)    cTTCGCCCCGGTGCGGGGGGCTTGGGACGCGCGCGAAGGAGTCACGGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGga                                                                                                                                                    >  6:203808‑M2/1‑146 (MQ=255)       cGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcg                                                                                                                                                 >  3:253913‑M2/1‑143 (MQ=255)             ggTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgc                                                                                                                                          <  3:219568‑M2/149‑13 (MQ=255)               tGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgccc                                                                                                                                        >  8:182837‑M2/1‑135 (MQ=255)                    gcggcTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgcgaa                                                                                                                                   >  4:219568‑M2/1‑130 (MQ=255)                         ttGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgc                                                                                                                                      <  4:222409‑M2/141‑17 (MQ=255)                         ttGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgc                                                                                                                                      >  3:222409‑M2/1‑125 (MQ=255)                         ttGGCAAGCGCGCGAAGGCGTCCCCGATTCCCTTAACTCACCTTTTGGGGCCGGTGGGGGGCCCTTCGCGGGCACGCCCGCGCTCACAGGATTCTTCGGTCTGAGCGGG‑GGGGCGGTACCTGTGGGAGCGGGGGTGCCCGCGAAGGGCt                                                                                                                              <  8:156729/149‑1 (MQ=255)                           gggAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACCCCCGCGCTCACAGGAATCATCGGGCTGAGCGGC‑GGGGCCGTACCTGGGGGAGCGGGCGTGGCCGCGAACGGCTg                                                                                                                             >  8:229048/1‑148 (MQ=38)                                 cgcgcgAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCCCGCCCGCTCTCACAGGATTCATCGGGCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAagca                                                                                                                      <  7:29878/149‑1 (MQ=255)                                 cgcgcgAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAagca                                                                                                                      <  8:179139/149‑1 (MQ=255)                                    gcgAAGGCGTCACCGATTCCCTGATCTGCCCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGcc                                                                                                                   <  3:277589/149‑1 (MQ=255)                                          gCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCaaa                                                                                                              >  2:233535/1‑148 (MQ=255)                                             tccccGATTCCCTGATCTCACCTATTGGGGCCGCTTCGCGGCCCTGCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGCGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCaaaaaaa                                                                                                          <  7:229048/146‑1 (MQ=255)                                                  gATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGGGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGcccc                                                                                                     <  7:149411/149‑1 (MQ=255)                                                  gATTCCCTGATCTCACCTATTGGGGCCGCTGCGCGGCCCTGCGCGGGCACGCCCGCGCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGcccc                                                                                                     <  7:144523/149‑1 (MQ=255)                                                                  cTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGTGCGGC‑GGGCCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATc                                                                                     <  1:117556/149‑1 (MQ=255)                                                                             gCTGCGCGGCCCTTCGCGGGCACGCCCGCTCACACAGGATTCATCGGGCTGCGCGGC‑GGGGCCGTACCTGGGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTc                                                                          <  3:281409/149‑1 (MQ=38)                                                                                  gcgGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCCAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCGTGTCCtt                                                                       >  6:350607/1‑147 (MQ=255)                                                                                        cTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTg                                                               >  5:282976/1‑149 (MQ=255)                                                                                                    gCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgcgaagggccgcgaagcggccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccgggg                                                   <  1:11652‑M2/149‑100 (MQ=255)                                                                                                      ccGCTCTCACAGGATTCATCGGTCTGAGCGGCTGGGGCCGTACCTGTGGgagcgggcgtgcccgcgaagggctgcaaagcagccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccggggc                                                  <  1:43052‑M2/149‑101 (MQ=255)                                                                                                        gCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgcgaagggctgcaaagcagccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccggggcg                                                 <  3:371447‑M2/147‑102 (MQ=255)                                                                                                         ctctCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATg                                              <  1:233535/149‑1 (MQ=255)                                                                                                            tcACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgcgaagggccgcgaagcggccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccggggcgaaggaa                                           <  4:275633‑M2/149‑108 (MQ=255)                                                                                                              acaGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgcgaagggccgcgaagcggccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccggggcgaaggaa                                           >  2:11652‑M2/1‑40 (MQ=255)                                                                                                              acaGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGt                                         >  4:201091/1‑149 (MQ=255)                                                                                                                  gATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTccc                                     >  5:352843/1‑149 (MQ=255)                                                                                                                   aTTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGgagcgggcgtgcccgcgaagggctgcaaagcagccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccggggcgaaggaacgccgat                                    >  4:371447‑M2/1‑35 (MQ=255)                                                                                                                     tCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTc                                  >  5:19784/1‑149 (MQ=255)                                                                                                                      cATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTc                                  <  6:19784/148‑1 (MQ=255)                                                                                                                       aTCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACt                                                                <  7:56597/117‑1 (MQ=255)                                                                                                                       aTCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCg                                 <  6:352843/148‑1 (MQ=255)                                                                                                                       aTCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCg                                 <  3:201091/148‑1 (MQ=255)                                                                                                                       aTCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGt                                >  4:101723/1‑149 (MQ=255)                                                                                                                       aTCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGt                                >  4:179716/1‑149 (MQ=255)                                                                                                                       aTCGGTCTGAGCAGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACt                                                                >  8:56597/1‑117 (MQ=255)                                                                                                                                    gc‑ggGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTc                   <  5:350607/149‑1 (MQ=255)                                                                                                                                          gCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTc              >  6:95248/1‑149 (MQ=255)                                                                                                                                           ccGTACGTTTGGgagcgggcgtgcccgcgaagggctgcaaagcagccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccggggcgaaggaacgccgatgaatgggcgtaggcccaagacgt             >  1:216191‑M2/1‑12 (MQ=255)                                                                                                                                              tACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGaa          >  8:224996/1‑149 (MQ=255)                                                                                                                                                   gagggAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGAATtctc     >  1:55935/3‑149 (MQ=255)                                                                                                                                                    tgGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGAATTCTCg    >  8:26480/1‑149 (MQ=255)                                                                                                                                                      ggagcgggcgtgcccgcgaagggccgcgaagcggccccaataggtcagatcagggaatcggtgacgccttcgcgcgcttcccaagccgcccgcaccggggcgaaggaacgccgatgaatgggcgtaggcccaagacgtgccaacgcctc  >  3:275633‑M2/1‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTGAGCGGC‑GGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGAATTCTCGCT  >  NC_002947/1799767‑1800063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.