New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3023022	50 (0.850)	8 (0.140)	8/246	NT	15.0%	intergenic (+41/‑297)	PP_2638/dapA‑II	cellulose synthase operon protein C/4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	= 3023052	43 (0.770)					intergenic (+71/‑267)	PP_2638/dapA‑II	cellulose synthase operon protein C/4‑hydroxy‑tetrahydrodipicolinate synthase

CCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCAAGAAACAGCCGCTCA  >  NC_002947/3022909‑3023194                                                                                                                                                |                                                                                                                                               ccTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCcgc                                                                                                                                             >  5:149854‑M2/1‑144 (MQ=255) ccTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTCGAGCCTTCCAGCGAGTGGCGGAGACGGCAAGCTCAGCGTTGAAAGCGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccc                                                                                                                                           >  5:267149‑M2/1‑144 (MQ=255)     ttCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCcca                                                                                                                                         <  4:121025/147‑1 (MQ=255)     ttCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCcca                                                                                                                                         <  3:358162/147‑1 (MQ=255)             gTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCGTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCa                                                                                                                               <  1:177074/149‑1 (MQ=255)                gCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGc                                                                                                                             <  1:177314/148‑1 (MQ=255)                        aCCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTAc                                                                                                                    <  8:300953/149‑1 (MQ=255)                                    cGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTg                                                                                                        <  3:326749/149‑1 (MQ=255)                                      gTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGc                                                                                                       >  3:347844/1‑148 (MQ=255)                                           acCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACa                                                                                                  <  6:316489/148‑1 (MQ=255)                                           acCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACAt                                                                                                 >  8:147448/1‑149 (MQ=255)                                             cGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGt                                                                                               >  3:353061/1‑149 (MQ=255)                                                 ggAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCca                                                                                            >  6:27929/1‑148 (MQ=255)                                                       ttCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCaa                                                                                     >  8:84611/1‑149 (MQ=255)                                                          cAGCGAGTGGCGGTGACTGCAATCGCTGAGTTGCAAGGGGCGCGACTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCAACATTATCCAGCCATACCGACGCAACGTGCTTGCAAACATGTCCACATCCacaca                                                                                  >  6:277509/1‑145 (MQ=255)                                                            gCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACg                                                                                <  4:353061/149‑1 (MQ=255)                                                               aGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCa                                                                             <  7:147448/149‑1 (MQ=255)                                                                        gACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCtt                                                                    >  4:66174/1‑149 (MQ=255)                                                                         aCGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTc                                                                   >  3:295043/1‑149 (MQ=255)                                                                           ggCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCgg                                                                 >  8:285170/1‑149 (MQ=255)                                                                             cAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGc                                                               >  1:114594/1‑149 (MQ=255)                                                                             cAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGACCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGc                                                               <  6:184213/149‑1 (MQ=255)                                                                              aaTCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCt                                                              >  3:107242/1‑149 (MQ=255)                                                                                        ttGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGca                                                      >  2:72562/1‑146 (MQ=255)                                                                                            aaGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTc                                                                   >  8:130484/1‑130 (MQ=255)                                                                                            aaGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCcagg                                                  >  4:346523/1‑147 (MQ=255)                                                                                              ggggCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCcaggcagg                                              >  8:99968/1‑149 (MQ=255)                                                                                              ggggCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCcaggcagg                                              >  3:289294/1‑149 (MQ=255)                                                                                                 gcgcgcCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGgcgc                                           <  3:66174/149‑1 (MQ=255)                                                                                                 gcgcgcCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGgcgc                                           <  2:55630/149‑1 (MQ=255)                                                                                                     gcCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCgcgtgc                                       <  3:118859/149‑1 (MQ=255)                                                                                                     gcCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCgcgtgc                                       <  7:84611/149‑1 (MQ=255)                                                                                                          cACGGGGCGATGCGGGCCAACGGTTGACACCAGGCACGCCCCCCCCCCAGTATCCAGCGATACCTACGCAACGCGCTTGCCAACTTGGCCACCTCCAACCACGCCCTTACCGCTTCGCGCTTCATCGCCCAGGCCGGCgcctgcgatag                                  >  1:133707/1‑145 (MQ=255)                                                                                                           aCGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaac                                 >  2:301593‑M2/1‑38 (MQ=255)                                                                                                           aCGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaa                                  <  1:301593‑M2/148‑111 (MQ=255)                                                                                                             ggggCGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggtt                                      >  8:348473‑M2/1‑36 (MQ=255)                                                                                                             ggggCGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggtt                                      <  7:348473‑M2/142‑107 (MQ=255)                                                                                                               ggCGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaacaggt                             <  7:272514‑M2/149‑116 (MQ=255)                                                                                                                 cGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcgg                                                                         <  1:234392‑M2/103‑72 (MQ=255)                                                                                                                 cGATGCGGGCCAAGGGTTGACACCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcgg                                                                         >  2:234392‑M2/1‑32 (MQ=255)                                                                                                                    tGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGcgttgcc                                 <  3:130762/140‑1 (MQ=255)                                                                                                                    tGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGcgttgcc                                 >  4:130762/1‑140 (MQ=255)                                                                                                                     gCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAg                        >  7:40133/1‑148 (MQ=255)                                                                                                                         gCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATc                   >  6:214832/1‑149 (MQ=255)                                                                                                                          ccAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGcgttgccgttg                             <  7:197248/138‑1 (MQ=255)                                                                                                                          ccAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGcgttgccgttg                             >  8:197248/1‑138 (MQ=255)                                                                                                                            aaGGGTTGACACCAGGCACGCCGCCCCACCATTCTCCAGCCATACCTACGCCACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCaa                <  5:277509/149‑1 (MQ=255)                                                                                                                             aGGGTTTACAGCAGGATCTCCGCCCCTCTATTATCCAGCGATACGTACGCAAGGGGCTTGCCAAGATGTCCACATCCAACCACGCCATTTCCTCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCAAg               <  5:371022/149‑1 (MQ=255)                                                                                                                                 ttGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCAAGAAAc           <  7:285170/149‑1 (MQ=255)                                                                                                                                    acacCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGCCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCAAGAAACAGc        >  1:148266/1‑149 (MQ=255)                                                                                                                                      acCAGGCACGCcgccccgtgcaggcgcgccccttgcaacgcagcgattgccgtcaccgccactcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaacaggtagcgcaggtagagcatgccatgg      >  8:272514‑M2/1‑11 (MQ=255)                                                                                                                                      acCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCAAGAAACAGCCg      >  8:69099/1‑149 (MQ=255)                                                                                                                                          ggCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCgcgt                                         <  8:153001/110‑1 (MQ=255)                                                                                                                                          ggCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCgcgt                                         >  7:153001/1‑110 (MQ=255)                                                                                                                                          ggCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCAAGAAACAGCCGCTCa  >  8:190214/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                               CCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCATTTCCGCTTCGGGCTTCATCGCCCAGGCAGGCGCGTGCGTTGCCGTTGCCAAGAAATCCAAGAAACAGCCGCTCA  >  NC_002947/3022909‑3023194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.