New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 365407249 (0.830)7 (0.120) 5/250 NT 13.7% coding (561/1101 nt) PP_3219 alkansulfonate monooxygenase
?NC_002947 = 3654130 41 (0.720)coding (503/1101 nt) PP_3219 alkansulfonate monooxygenase

ACGCCCATGGCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTCGTCGGTACGTGCGTAGCGGGCATCTTTGTCGAG  >  NC_002947/3653982‑3654272
                                                                                                                                                     |                                                                                                                                               
aCGCCCATGGCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCt                                                                                                                                                 >  2:362219/1‑149 (MQ=255)
  gCCCATGGCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtg                                                                                                                                               >  6:35316‑M2/1‑147 (MQ=255)
  gCCCATGGCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtg                                                                                                                                               >  1:362219‑M2/1‑147 (MQ=255)
    ccATGGCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtgcc                                                                                                                                             <  4:261824‑M2/149‑5 (MQ=255)
     cATGGCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGccc                                                                                                                                            <  2:5485/149‑1 (MQ=255)
         gCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACgg                                                                                                                                        <  1:302865/149‑1 (MQ=255)
         gCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTACTACCGCCGCGACCGAGGCGCCGGAGAAGTACACCGGCAGCTTTCCCACgg                                                                                                                                        >  6:263723/1‑149 (MQ=255)
               ggcggcCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGa                                                                                                                                  <  4:180164/149‑1 (MQ=255)
                    acTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACTTCATGTAGACGTCGGCTTGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCTCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAg                                                                                                                             <  5:263723/148‑1 (MQ=255)
                        gcgcACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTc                                                                                                                          <  2:191686/148‑1 (MQ=255)
                          gcACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAgg                                                                                                                       <  2:27302/149‑1 (MQ=255)
                            aCCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGtt                                                                                                                     <  5:174877/149‑1 (MQ=255)
                                  gCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGAAGACGTCGGCATGCTTGGCCGCGACTTCTACCGACGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCAACGGGTTTGACCAAGGTCAGGTTGTCctc                                                                                                              >  3:321683/1‑149 (MQ=255)
                                     aTGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTAc                                                                                                           >  2:26894/1‑149 (MQ=255)
                                           tCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACggg                                                                                                                                       <  6:107003/116‑1 (MQ=255)
                                           tCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACggg                                                                                                                                       >  5:107003/1‑116 (MQ=255)
                                             gcgcACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTa                                                                                                     <  6:115198/147‑1 (MQ=255)
                                             gcgcACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTa                                                                                                     >  5:115198/1‑147 (MQ=255)
                                             gcgcACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAg                                                                                                    <  3:75901/148‑1 (MQ=255)
                                             gcgcACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGt                                                                                                   >  2:247037/1‑149 (MQ=255)
                                                 aCCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTc                                                                                               >  1:311624/1‑149 (MQ=255)
                                                   cTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGc                                                                                             >  5:376417/1‑149 (MQ=255)
                                                   cTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGc                                                                                             >  7:70146/1‑149 (MQ=255)
                                                   cTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGc                                                                                             >  2:16523/1‑149 (MQ=255)
                                                       tCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCgtg                                                                                         >  5:48544/1‑149 (MQ=255)
                                                         cAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCgtggt                                                                                       <  2:311624/149‑1 (MQ=255)
                                                         cAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCgtgg                                                                                        <  6:48544/148‑1 (MQ=255)
                                                          aGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCgtggtg                                                                                      <  1:298529/149‑1 (MQ=255)
                                                              gCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCCTCTACCCGGTAGTGGTCGCCGTGGTGGTc                                                                                   <  1:26894/149‑1 (MQ=255)
                                                                     ccACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCg                                                                           >  3:198278/1‑149 (MQ=255)
                                                                            atGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCt                                                                     <  5:172849/148‑1 (MQ=255)
                                                                             tGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTgg                                                                   >  4:289481/1‑149 (MQ=255)
                                                                                   cGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAg                                                             <  3:261824/149‑1 (MQ=255)
                                                                                    gTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtgccgacgtctacatgatgtggggcgagccgctggagcaggtgcgcgaacgcatcgcccaggtgcgcaaggccgccgctcgcca                                                             <  5:143740‑M2/149‑85 (MQ=255)
                                                                                     tCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtgccgacgtctacatgatgtggggcgagccgctggagcaggtgcgcgaacgcatcgcccaggtgcgcaaggccgccgctcgccat                                                            <  8:297555‑M2/149‑86 (MQ=255)
                                                                                     tCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtgccgacgtctacatgatgtggggcgagccgctggagcaggtgcgcgaacgcatcgcccaggtgcgcaaggccgccgctcgccat                                                            <  8:303062‑M2/149‑86 (MQ=255)
                                                                                     tCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGgt                                                           <  3:306989/149‑1 (MQ=255)
                                                                                       ggCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACgg                                                                                                                                        >  8:249974/1‑71 (MQ=255)
                                                                                       ggCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACgg                                                                                                                                        <  7:249974/71‑1 (MQ=255)
                                                                                                   cgcgACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACAt                                             <  1:16523/149‑1 (MQ=255)
                                                                                                   cgcgACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACAt                                             <  7:166241/149‑1 (MQ=255)
                                                                                                      gACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGa                                          <  3:168882/149‑1 (MQ=255)
                                                                                                      gACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCGCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATc                                            >  5:326278/1‑147 (MQ=255)
                                                                                                      gACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTCGCGGCCAAGCAtgccgacgtctacatgatgtggggcgagccgctggagcaggtgcgcgaacgcatcgcccaggtgcgcaaggccgccgctcgccatgggcgtgagcagcacat                                           <  3:34231‑M2/149‑103 (MQ=255)
                                                                                                        cTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtgccgacgtctacatgatgtggggcgagccgctggagcaggtgcgcgaacgcatcgcccaggtgcgcaaggccgccgctcgccatgggcgtgagcagcacattc                                         >  7:303062‑M2/1‑45 (MQ=255)
                                                                                                        cTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtgccgacgtctacatgatgtggggcgagccgctggagcaggtgcgcgaacgcatcgcccaggtgcgcaaggccgccgctcgccatgggcgtgagcagcacattc                                         >  7:297555‑M2/1‑45 (MQ=255)
                                                                                                              ccgccgCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGCCGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATtcg                                  >  4:136713/1‑149 (MQ=255)
                                                                                                               cgccgcGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGGCCAGGTGTTACGCAGCACATCGAGGTATtcgt                                 <  3:289481/149‑1 (MQ=255)
                                                                                                                gccgcGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTtgccgacgtctacatgatgtggggcgagccgctggagcaggtgcgcgaacgcatcgcccaggtgcgcaaggccgccgctcgccatgggcgtgagcagcacattcgcttcagc                                 >  6:143740‑M2/1‑37 (MQ=255)
                                                                                                                 ccgcGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATtcgtcg                               <  6:376417/149‑1 (MQ=255)
                                                                                                                 ccgcGTCCGAGGCGCAGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAATGTCAGTTTGTCCTCTACCCTGTAGTGGTCGCCGTTGTGGTCGAAGGGCTACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATtcgtcg                               <  4:321683/149‑1 (MQ=255)
                                                                                                                         gAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTCGTCGGTACGTGc                       <  4:198278/149‑1 (MQ=255)
                                                                                                                              gcCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTCGTCGGTACGTGCGTAGc                  >  5:315638/1‑149 (MQ=255)
                                                                                                                               ccGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTCGTCGGTACGTGCGTAGCg                 <  4:67905/149‑1 (MQ=255)
                                                                                                                                   agaAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTCGTCGGTACGTGCGTAGCGGGCa             <  8:70146/149‑1 (MQ=255)
                                                                                                                                    gaAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTTCCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTCGTCGGTACGTGCGTAGCGGGCAt            <  3:136713/149‑1 (MQ=255)
                                                                                                                                               gCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTTGTCGGTACGTGCGTAGCGGGCATCTTTGTCgag  >  6:126826/1‑148 (MQ=255)
                                                                                                                                                     |                                                                                                                                               
ACGCCCATGGCGAGCGGCGGCCTTGCGCACCTGGGCGATGCGTTCGCGCACCTGCTCCAGCGGCTCGCCCCACATCATGTAGACGTCGGCATGCTTGGCCGCGACTTCTACCGCCGCGTCCGAGGCGCCGGAGAAGTACACCGGCAGCTTGCCCACGGGTTTGACCAAGGTCAGGTTGTCCTCTACCCGGTAGTGGTCGCCGTGGTGGTCGAAGGGCGACGTCTGGGTCCAGGTGTTACGCAGCACATCGAGGTATTCGTCGGTACGTGCGTAGCGGGCATCTTTGTCGAG  >  NC_002947/3653982‑3654272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.