New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 465555949 (0.830)4 (0.070) 4/248 NT 7.7% coding (454/696 nt) PP_4118 membrane protein
?NC_002947 = 4655583 49 (0.870)coding (478/696 nt) PP_4118 membrane protein

CTGCGCCCCGCCCTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCGGCCAATGGGCCATCGCTT  >  NC_002947/4655439‑4655730
                                                                                                                                                |                                                                                                                                                    
cTGCGCCCCGCCCTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtggc                                                                                                                                                  <  4:320073‑M2/149‑5 (MQ=255)
     ccccgcccTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCg                                                                                                                                            <  3:9602/149‑1 (MQ=255)
          cccTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGa                                                                                                                                       <  8:51138/149‑1 (MQ=255)
          cccTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGa                                                                                                                                       <  8:355339/149‑1 (MQ=255)
            cTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGt                                                                                                                                     <  6:79685/149‑1 (MQ=255)
              gCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTgg                                                                                                                                   >  3:91053/1‑149 (MQ=255)
                  gCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGgcag                                                                                                                                >  4:156341/1‑148 (MQ=255)
                      tGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTg                                                                                                                           >  6:170383/1‑149 (MQ=255)
                           ttCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGc                                                                                                                      >  6:7890/1‑149 (MQ=255)
                             cAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTgg                                                                                                                                   <  4:5300/134‑1 (MQ=255)
                             cAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTgg                                                                                                                                   >  3:5300/1‑134 (MQ=255)
                               gcgcAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGc                                                                                                                  <  5:115601/149‑1 (MQ=255)
                               gcgcAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGc                                                                                                                  <  3:156341/149‑1 (MQ=255)
                               gcgcAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGc                                                                                                                  >  8:38915/1‑149 (MQ=255)
                                     tCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtg                                                                                                                                                    >  5:121657‑M2/1‑108 (MQ=255)
                                     tCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtg                                                                                                                                                    <  6:121657‑M2/110‑3 (MQ=255)
                                     tCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTc                                                                                                            <  3:320073/149‑1 (MQ=255)
                                       aCTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt                                                                                                          <  1:150055/149‑1 (MQ=255)
                                       aCTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt                                                                                                          <  5:53159/149‑1 (MQ=255)
                                       aCTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt                                                                                                          >  6:19342/1‑149 (MQ=255)
                                        cTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgtg                                                                                                         >  5:127958/1‑149 (MQ=255)
                                        cTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgtg                                                                                                         <  5:170383/149‑1 (MQ=255)
                                                      ctCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCt                                                                                           >  6:301977/1‑149 (MQ=255)
                                                         ggCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGa                                                                                         <  5:7890/148‑1 (MQ=255)
                                                         ggCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGAt                                                                                        >  5:356139/1‑149 (MQ=255)
                                                                  gacAGCAACGGACTCGGCCCCTTGCTGATACCGCAAGCACACTACGCCCTCGCCATCACCGCCATGCTCTGGCGCGCACAAGCCTGAGGCGGAGTGGCAGCACTGGGTGCCGGCCAGATAGTGTTATCCGACAGCCTGAGCGGCATCgc                                                                               >  8:286312/3‑148 (MQ=255)
                                                                     aGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCg                                                                            >  5:257391/1‑149 (MQ=255)
                                                                       cAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCt                                                                          <  6:257391/149‑1 (MQ=255)
                                                                        aaCGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt                                                                                                          >  8:342510/1‑116 (MQ=255)
                                                                        aaCGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt                                                                                                          <  7:342510/116‑1 (MQ=255)
                                                                         aCGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTtc                                                                        <  5:301977/149‑1 (MQ=255)
                                                                            gCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTtcat                                                                      >  1:144910/1‑148 (MQ=255)
                                                                                   cccGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGt                                                              >  3:146606/1‑149 (MQ=255)
                                                                                     cGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTc                                                            <  4:91053/149‑1 (MQ=255)
                                                                                             aTCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTcgccgccg                                                     >  1:37379/1‑148 (MQ=255)
                                                                                                       cACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGAc                                                                              <  1:138764/113‑1 (MQ=255)
                                                                                                       cACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGAc                                                                              >  2:138764/1‑113 (MQ=255)
                                                                                                          tctACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTc                                                            >  1:322163/1‑128 (MQ=255)
                                                                                                          tctACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTc                                                            <  2:322163/128‑1 (MQ=255)
                                                                                                            tACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGatcat                                     >  2:1608/1‑149 (MQ=255)
                                                                                                            tACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGAGGGGGAGTGGCAGCTCTGGGTGCCGGCATGTTCGTGTTCTCCGACAGCCTGATCGGAATCGAGCGATTCATCAGCCCGTTCGCCGCCTCACCGTACCTGatc                                       <  7:286312/147‑1 (MQ=255)
                                                                                                             aCGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGc                                                                  >  6:317608/1‑119 (MQ=255)
                                                                                                             aCGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGc                                                                  <  5:317608/119‑1 (MQ=255)
                                                                                                              cGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATcc                                   >  3:153550/1‑149 (MQ=255)
                                                                                                               gCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgc                                                              <  8:349244‑M2/122‑89 (MQ=255)
                                                                                                               gCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgc                                                              >  7:349244‑M2/1‑34 (MQ=255)
                                                                                                               gCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATcc                                   >  1:268544/1‑149 (MQ=255)
                                                                                                                cccTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTc                                 <  4:146606/149‑1 (MQ=255)
                                                                                                                 ccTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCg                                >  4:136298/1‑149 (MQ=255)
                                                                                                                 ccTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCg                                >  6:173580/1‑149 (MQ=255)
                                                                                                                   tGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgcgctgaagatcagtgcgggcagggcggg                                   >  6:122825‑M2/1‑30 (MQ=255)
                                                                                                                   tGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgcgctgaagatcagtgcgggcagggcggg                                   <  5:122825‑M2/145‑116 (MQ=255)
                                                                                                                     gCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCt                             <  6:127958/148‑1 (MQ=255)
                                                                                                                       cATCAGCGCCATGCTCTGGCGCGCACTGGCCTCCGGGGGAGTGGCAGCACTGGCTGACGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCAACGACCGCATCATCAGCCCGTTCGCCTCCGCACCGTACCTGATAATCCTCGCCTACt                          >  4:273503/1‑149 (MQ=255)
                                                                                                                                   gCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCg                    >  6:328163/1‑143 (MQ=255)
                                                                                                                                   gCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCg                    <  5:328163/143‑1 (MQ=255)
                                                                                                                                       tGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCTCTGGGTGCCGGCCTGTTCGTGTTCTCAGAGAGCCTGATCGGCTTCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCATACTGGCTCGGCCAATgg            <  3:273503/147‑1 (MQ=255)
                                                                                                                                               aCTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCGGCCAATGGGCCATCGCtt  >  1:338107/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
CTGCGCCCCGCCCTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCGGCCAATGGGCCATCGCTT  >  NC_002947/4655439‑4655730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.