New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4655559 | 49 (0.830) | 4 (0.070) | 4/248 | NT | 7.7% | coding (454/696 nt) | PP_4118 | membrane protein |
? | NC_002947 | = 4655583 | 49 (0.870) | coding (478/696 nt) | PP_4118 | membrane protein |
CTGCGCCCCGCCCTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCGGCCAATGGGCCATCGCTT > NC_002947/4655439‑4655730 | cTGCGCCCCGCCCTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtggc < 4:320073‑M2/149‑5 (MQ=255) ccccgcccTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑g < 3:9602/149‑1 (MQ=255) cccTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGa < 8:51138/149‑1 (MQ=255) cccTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGa < 8:355339/149‑1 (MQ=255) cTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGt < 6:79685/149‑1 (MQ=255) gCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTgg > 3:91053/1‑149 (MQ=255) gCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGgcag > 4:156341/1‑148 (MQ=255) tGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTg > 6:170383/1‑149 (MQ=255) ttCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGc > 6:7890/1‑149 (MQ=255) cAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTgg < 4:5300/134‑1 (MQ=255) cAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTgg > 3:5300/1‑134 (MQ=255) gcgcAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGc < 5:115601/149‑1 (MQ=255) gcgcAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGc < 3:156341/149‑1 (MQ=255) gcgcAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGc > 8:38915/1‑149 (MQ=255) tCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtg > 5:121657‑M2/1‑108 (MQ=255) tCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtg < 6:121657‑M2/110‑3 (MQ=255) tCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTc < 3:320073/149‑1 (MQ=255) aCTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt < 1:150055/149‑1 (MQ=255) aCTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt < 5:53159/149‑1 (MQ=255) aCTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt > 6:19342/1‑149 (MQ=255) cTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgtg > 5:127958/1‑149 (MQ=255) cTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgtg < 5:170383/149‑1 (MQ=255) ctCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCt > 6:301977/1‑149 (MQ=255) ggCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGa < 5:7890/148‑1 (MQ=255) ggCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGAt > 5:356139/1‑149 (MQ=255) gacAGCAACGGACTCGGCCCCTTGCTGATACCGCAAGCACACTACGCCCTCGCCATCACCGCCATGCTCTGGCGCGCACAAGCCTGA‑GGCGGAGTGGCAGCACTGGGTGCCGGCCAGATAGTGTTATCCGACAGCCTGAGCGGCATCgc > 8:286312/3‑148 (MQ=255) aGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCg > 5:257391/1‑149 (MQ=255) cAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCt < 6:257391/149‑1 (MQ=255) aaCGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt > 8:342510/1‑116 (MQ=255) aaCGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCgt < 7:342510/116‑1 (MQ=255) aCGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTtc < 5:301977/149‑1 (MQ=255) gCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTtcat > 1:144910/1‑148 (MQ=255) cccGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGt > 3:146606/1‑149 (MQ=255) cGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTc < 4:91053/149‑1 (MQ=255) aTCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTcgccgccg > 1:37379/1‑148 (MQ=255) cACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGAc < 1:138764/113‑1 (MQ=255) cACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGAc > 2:138764/1‑113 (MQ=255) tctACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTc > 1:322163/1‑128 (MQ=255) tctACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTc < 2:322163/128‑1 (MQ=255) tACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGatcat > 2:1608/1‑149 (MQ=255) tACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGA‑GGGGGAGTGGCAGCTCTGGGTGCCGGCATGTTCGTGTTCTCCGACAGCCTGATCGGAATCGAGCGATTCATCAGCCCGTTCGCCGCCTCACCGTACCTGatc < 7:286312/147‑1 (MQ=255) aCGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGc > 6:317608/1‑119 (MQ=255) aCGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGc < 5:317608/119‑1 (MQ=255) cGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATcc > 3:153550/1‑149 (MQ=255) gCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgc < 8:349244‑M2/122‑89 (MQ=255) gCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgc > 7:349244‑M2/1‑34 (MQ=255) gCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGCGGGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATcc > 1:268544/1‑149 (MQ=255) cccTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTc < 4:146606/149‑1 (MQ=255) ccTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCg > 4:136298/1‑149 (MQ=255) ccTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCg > 6:173580/1‑149 (MQ=255) tGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgcgctgaagatcagtgcgggcagggcggg > 6:122825‑M2/1‑30 (MQ=255) tGGCCATCAGCGCCATGCTCTGGCGCGCACtggccagggcgtagagtgctaccgggatcagcaacgggccgaggccgttgctggccagtacgccgagcagcgcgatgccagtgattgcgctgaagatcagtgcgggcagggcggg < 5:122825‑M2/145‑116 (MQ=255) gCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCt < 6:127958/148‑1 (MQ=255) cATCAGCGCCATGCTCTGGCGCGCACTGGCCTCC‑GGGGGAGTGGCAGCACTGGCTGACGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCAACGACCGCATCATCAGCCCGTTCGCCTCCGCACCGTACCTGATAATCCTCGCCTACt > 4:273503/1‑149 (MQ=255) gCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCg > 6:328163/1‑143 (MQ=255) gCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCg < 5:328163/143‑1 (MQ=255) tGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCTCTGGGTGCCGGCCTGTTCGTGTTCTCAGAGAGCCTGATCGGCTTCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCATACTGGCTCGGCCAATgg < 3:273503/147‑1 (MQ=255) aCTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCGGCCAATGGGCCATCGCtt > 1:338107/1‑149 (MQ=255) | CTGCGCCCCGCCCTGCCCGCACTGATCTTCAGCGCAATCACTGGCATCGCGCTGCTCGGCGTACTGGCCAGCAACGGCCTCGGCCCGTTGCTGATCCCGGTAGCACTCTACGCCCTGGCCATCAGCGCCATGCTCTGGCGCGCACTGGCCTGC‑GGGGGAGTGGCAGCACTGGGTGCCGGCCTGTTCGTGTTCTCCGACAGCCTGATCGGCATCGACCGCTTCATCAGCCCGTTCGCCGCCGCACCGTACCTGATCATCCTCGCCTACTGGCTCGGCCAATGGGCCATCGCTT > NC_002947/4655439‑4655730 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |