New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5637686	46 (0.780)	3 (0.050)	3/244	NT	6.7%	coding (220/1443 nt)	PP_4949	TldD/PmbA family peptidase
	?	NC_002947	= 5637741	40 (0.720)					coding (275/1443 nt)	PP_4949	TldD/PmbA family peptidase

ACCCTTCTTCAGCCAGGATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTGCCCAAGGACAGCCGTTTG  >  NC_002947/5637595‑5637889                                                                                                                                                   |                                                                                                                                                     aCCCTTCTTCAGCCAGGATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAca                                                                                                                                                    >  5:240027‑M2/1‑147 (MQ=255)   ccTTCTTCAGCCAGGATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAcagc                                                                                                                                                  >  6:360998‑M2/1‑145 (MQ=255)    cttcttCAGCCAGGATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAcagcc                                                                                                                                                 >  5:149517‑M2/1‑144 (MQ=255)           aGCCAGGATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTgg                                                                                                                                           <  3:136274/148‑1 (MQ=255)             ccAGGATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGAcc                                                                                                                                        >  8:179495/1‑149 (MQ=255)                 gATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTgcg                                                                                                                                    >  6:308401/1‑149 (MQ=255)                 gATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTgcg                                                                                                                                    >  1:292973/1‑149 (MQ=255)                     aGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAg                                                                                                                                >  2:113469/1‑149 (MQ=255)                      gggCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCCGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAg                                                                                                                                >  5:35151/1‑148 (MQ=255)                          gcCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGc                                                                                                                           <  2:169591/149‑1 (MQ=255)                            cATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCg                                                                                                                         <  7:10923/149‑1 (MQ=255)                             aTGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGt                                                                                                                        <  7:179495/149‑1 (MQ=255)                               gCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGa                                                                                                                      >  1:243210/1‑149 (MQ=255)                                cTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGa                                                                                                                      <  2:105069/148‑1 (MQ=255)                                cTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGAc                                                                                                                     >  7:306682/1‑149 (MQ=255)                                  cACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGAc                                                                                                                     >  2:271206/1‑147 (MQ=255)                                                      tGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCAtgtg                                                                                               >  1:140897/1‑149 (MQ=255)                                                       ggAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCAtgtg                                                                                               >  2:168511/1‑148 (MQ=255)                                                       ggAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCAtgtg                                                                                               <  1:168511/148‑1 (MQ=255)                                                          ggCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGc                                                                                           <  2:243210/149‑1 (MQ=255)                                                             cTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAcagc                                                                                                                                                  <  1:152451‑M2/91‑5 (MQ=255)                                                             cTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAcagc                                                                                                                                                  >  2:152451‑M2/1‑87 (MQ=255)                                                                cGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACt                                                                                     >  4:279976/1‑149 (MQ=255)                                                                     ccACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCACCTTCGAc                                                                                >  8:240823/1‑149 (MQ=255)                                                                        ccgccgACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCAAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCaa                                                                             <  2:292973/149‑1 (MQ=255)                                                                                  gTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTAcc                                                                     >  5:95004/1‑147 (MQ=255)                                                                                   tCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAg                                                                  >  6:340315/1‑149 (MQ=255)                                                                                    cccAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAcagcctgggacaggtcggcggtggcagcgtaggcctccacgccattgacccgcacggtga                                                                                          <  3:191584‑M2/124‑61 (MQ=255)                                                                                    cccAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAcagcctgggacaggtcggcggtggcagcgtaggcctccacgccattcacccgcacggtga                                                                                          >  4:191584‑M2/1‑64 (MQ=255)                                                                                     ccAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCAcagcctgggacaggtcggcggtggcagcgtaggcctccacgccattgacccgcacggtgagcatggcgccctcatcctggctg                                                                   <  8:226987‑M2/146‑84 (MQ=255)                                                                                        ggCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCg                                                             <  8:306682/149‑1 (MQ=255)                                                                                             gCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGa                                                         <  6:95004/148‑1 (MQ=255)                                                                                              ccTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACt                                                       >  5:154/1‑149 (MQ=255)                                                                                              ccTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACt                                                       <  6:261273/149‑1 (MQ=255)                                                                                                   aGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCtt                                                  >  1:218970/1‑149 (MQ=255)                                                                                                      gcgcCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGc                                               <  6:154/149‑1 (MQ=255)                                                                                                          ccTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGc                                           >  1:25059/1‑149 (MQ=255)                                                                                                                 cAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTcgccgc                                    >  1:229893/1‑149 (MQ=255)                                                                                                                   aGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCgccgcc                                   >  1:68486/1‑148 (MQ=255)                                                                                                                     ccGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGaa                                <  5:340315/149‑1 (MQ=255)                                                                                                                          gcgcTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCTGAATCGGc                           <  6:35151/149‑1 (MQ=255)                                                                                                                                gcgcGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGt                     >  2:314471/1‑149 (MQ=255)                                                                                                                                 cgcgGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTg                    <  2:229893/149‑1 (MQ=255)                                                                                                                                 cgcgGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTg                    <  2:140897/149‑1 (MQ=255)                                                                                                                                   cgGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTGcc                  <  5:229505/149‑1 (MQ=255)                                                                                                                                    ggCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTGccc                 <  2:218970/149‑1 (MQ=255)                                                                                                                                       aGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCTGCCTCGCCGACTGCCt                                                   >  1:302622/1‑112 (MQ=255)                                                                                                                                       aGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCt                                                   <  2:302622/112‑1 (MQ=255)                                                                                                                                       aGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTGCCCAAg              <  2:25059/149‑1 (MQ=255)                                                                                                                                                   acaGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTGCCCAAGGACAGCCGTTtg  <  5:308401/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ACCCTTCTTCAGCCAGGATGAGGGCGCCATGCTCACCGTGCGGGTCAATGGCGTGGAGGCCTACGCTGCCACCGCCGACCTGTCCCAGGCTGGCCTGCAGCGCGCCCTTGAGCAAGCCGAGGCGCTGGCGCGGCAGATCGCCCGGCACAGCCTGCTGGACCTGCGCGAGCACGCCGTGACCAGCGCACGGCACGACCATGTGTCGCCCAACTTCGACCAACCCGTACCCAGCCTCGCCGACTGCCTTGGCCTGCTCGCCGCCGAATCGGCCAGCGTGCCCAAGGACAGCCGTTTG  >  NC_002947/5637595‑5637889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.