New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5917105 = | 60 (1.020) | 7 (0.120) | 6/246 | NT | 12.5% | coding (163/1368 nt) | ygiF | thiamine triphosphatase |
? | NC_002947 | 5917135 = | 41 (0.730) | coding (193/1368 nt) | ygiF | thiamine triphosphatase |
CCTTGCCGCCCTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACCTGCTGGCCCGAGCAACTGGCCAACCTGGAC > NC_002947/5916987‑5917281 | ccTTGCCGCCCTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACg > 1:172775/1‑149 (MQ=255) ccTTGCCGCCCTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACg > 6:277028/1‑149 (MQ=255) gtggcgtcgagcttcttcaggtcgagcttgaccttgtccaggttccattcgtactcgttgcgttaggacatgccggccacgctctggccgcggcacttgagggtttgaatgacagcGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCt > 6:324299‑M1/117‑149 (MQ=255) gccgccCTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGCCCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGt > 3:293088/1‑149 (MQ=255) ccgccCTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGt < 4:97632/148‑1 (MQ=255) cccTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCAtt < 5:342454/149‑1 (MQ=255) cccTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCAtt < 6:144213/149‑1 (MQ=255) cccTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCAtt > 4:32507/1‑149 (MQ=255) ctctGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTAGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCAGTCACTCCCTCAAGTGc > 8:241442/1‑149 (MQ=255) ctgAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCcg < 2:244640/146‑1 (MQ=255) tgaccttgtccaggttccattcgtactcgttgcgttcggacaggccggccacgctctggccgcggcacttgagggtttgaatgacagcGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCt > 8:259457‑M1/89‑121 (MQ=255) tgaccttgtccaggttccattcgtactcgttgcgttcggacaggccggccacgctctggccgcggcacttgagggtttgaatgacagcGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCt < 7:259457‑M1/33‑1 (MQ=255) gAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCcgcg > 8:125086/1‑146 (MQ=255) gAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCcgcg < 7:125086/146‑1 (MQ=255) gAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGc > 2:92057/1‑148 (MQ=255) gAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCAGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGc > 8:304570/1‑148 (MQ=255) aaaaGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCGGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCa < 7:304570/148‑1 (MQ=255) aaaGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCaga < 5:277028/149‑1 (MQ=255) aGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTggccggc < 6:5956/149‑1 (MQ=255) gcGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCt < 8:153041/147‑1 (MQ=255) cGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGGCCGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCt < 1:92057/148‑1 (MQ=255) ggCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTc < 3:136028/149‑1 (MQ=255) ggCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTc < 8:29576/149‑1 (MQ=255) aGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGc < 4:171463/149‑1 (MQ=255) aCCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCaa < 3:32507/149‑1 (MQ=255) gTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTggccggc > 5:186408/1‑131 (MQ=255) gTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTggccggc < 6:186408/131‑1 (MQ=255) gAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTg > 3:247349/1‑107 (MQ=255) gAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTg < 4:247349/107‑1 (MQ=255) gAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTa > 3:209433/1‑149 (MQ=255) aaCTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTggccg < 2:190832/126‑1 (MQ=255) aaCTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTggccg > 1:190832/1‑126 (MQ=255) tCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATg > 8:92280/1‑148 (MQ=255) gctctggccgcggcacttgagggtttgaatgacagcGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCAtt < 5:253154‑M1/39‑1 (MQ=255) gctctggccgcggcacttgagggtttgaatgacagcGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCAtt > 6:253154‑M1/37‑75 (MQ=255) ccccGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGc > 4:297958/1‑149 (MQ=255) ccccGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCAGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGc > 4:298446/1‑149 (MQ=255) gCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTc < 6:174175/133‑1 (MQ=255) gCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTc > 5:174175/1‑133 (MQ=255) tGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGATTGGAACCTGGACAAGGTCAAGCTCGACCTGaagaag > 2:136629/1‑149 (MQ=255) gTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGc > 1:241357/1‑149 (MQ=255) tCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACTCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTgaag < 6:80264/144‑1 (MQ=255) tCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGaagaag < 7:92280/147‑1 (MQ=255) tCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCt > 2:4291/1‑149 (MQ=255) cgccgcCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTg < 8:265442/148‑1 (MQ=255) cgccgcCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTg < 5:230443/148‑1 (MQ=255) ccgccCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGAc < 4:209433/149‑1 (MQ=255) aatgacagcgtcgccatcgcggcgcaggcgcagggcgacGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGc < 5:253154‑M2/36‑1 (MQ=255) aatgacagcgtcgccatcgcggcgcaggcgcagggcgacGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGc > 6:253154‑M2/40‑75 (MQ=255) cGTGGCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCAc < 2:250860/149‑1 (MQ=255) agcgtcgccatcgcggcgcaggcgcagggcgacGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCa < 7:259457‑M2/88‑1 (MQ=255) agcgtcgccatcgcggcgcaggcgcagggcgacGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCa > 8:259457‑M2/34‑121 (MQ=255) agcgtcgccatcgcggcgcaggcgcagggcgacGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCATGTCCTAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTCGACGCCAc > 6:324299‑M2/34‑149 (MQ=255) GCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACctgct > 2:241357‑M1/1‑148 (MQ=255) gccatcgcggcgcaggcgcagggcgacGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACctgctg > 7:63866‑M2/28‑149 (MQ=255) cgcctgcgccGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACCTGCTAGCCCg < 5:104947/148‑1 (MQ=255) gcggcgcaggcgcagggcgacGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACCTGCTGGCCCGa < 8:63866‑M2/128‑1 (MQ=255) cgccgcGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACCTGCTGGCCCGAGCAACt < 7:241442/149‑1 (MQ=255) aTGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACCTGCTGGCCCGAGCAACTGGCCAAc < 1:4291/149‑1 (MQ=255) acGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACCTGCTGGCCCGAGCAACTGGCCAACCTGGAc < 3:298446‑M2/147‑1 (MQ=255) | CCTTGCCGCCCTGCGCGAGCACCCTCTGCTGAAAAAGCGCAACAAGTCCGGCTGGCAGACCCGTGAACTGCTCAACCAGTACTTCGACACCCCCGAGCGTGAGCTGTCCGCCGCCCGTGTCGCCCTGCGCCTGCGCCGCGATGG‑CGACGCTGTCATTCAAACCCTCAAGTGCCGCGGCCAGAGCGTGGCCGGCCTGTCCGAACGCAACGAGTACGAATGGAACCTGGACAAGGTCAAGCTCGACCTGAAGAAGCTGGACGCCACCTGCTGGCCCGAGCAACTGGCCAACCTGGAC > NC_002947/5916987‑5917281 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |