New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	80983 =	48 (0.930)	4 (0.080)	4/240	NT	8.7%	intergenic (+40/‑94)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	81062 =	40 (0.840)					intergenic (+119/‑15)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein

CTCATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/81139‑80983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGGATA  >  NC_002947/81062‑81206                                                                                                                                                                                                                                                                                                                CTCATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGC                                                                                                                                                           >  6:630/1‑149  TCATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCC                                                                                                                                                          >  2:148933/1‑149    ATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCC                                                                                                                                                         >  1:60375/1‑148    ATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCC                                                                                                                                                         <  2:60375/148‑1                                                                                        CATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAG                                                                                 >  1:310561/1‑136                                                                                        CATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAG                                                                                 <  2:310561/136‑1                                                                                           GCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATG                                                                                         >  7:53124/1‑125                                                                                           GCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATG                                                                                         <  8:53124/125‑1                                                                                                                                                     CCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGG       >  2:21184/1‑149                                                                                                                                                      CCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGG      <  4:37171/149‑1                                                                                                                                                      CCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGA                                                                      <  3:61712/85‑1                                                                                                                                                      CCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGA                                                                      >  4:61712/1‑85                                                                                                                                                         CTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGGAT   <  1:71106/149‑1                                                                                                                                                          TCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGGATA  <  3:307706/149‑1                                                                                                                                                          TCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGGA    <  2:299633/147‑1                                                                                                                                                          TCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCACGAAAGGGGA    >  1:299633/1‑147                                                                                                                                                                                                                                                                                                                CTCATCGAAGACCTCGTTACCATAGCCATCATCGCGACCAAACGTGCTGCGAAGGGCAGTCATGTGCGTGACACTTTCGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/81139‑80983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGGATA  >  NC_002947/81062‑81206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.