| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 877021 = | 51 (0.990) | 4 (0.090) | 4/236 | NT | 7.5% | coding (138/999 nt) | rsmC | 16S rRNA methyltransferase |
| ? | NC_002947 | 877102 = | 53 (1.130) | coding (57/999 nt) | rsmC | 16S rRNA methyltransferase | |||||
TTCCAGGAGACGTCGTCCATGGACCCGCGCAGTGAAGTGTTGCTCCGTCAGGCAGAGCTGTTTCAGGGGCCGCTGCTGATCGCCGGCGCCCCCGCCGACGACCTGCTCGGCCAGTTGCCTCAGGCCCAGGCCTGGACCTGGCATGCCGGCGATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/877176‑877021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcgatcagCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAG > NC_002947/877102‑877249 TTCCAGGAGACGTCGTCCATGGACCCGCGCAGTGAAGTGTTGCTCCGTCAGGCAGAGCTGTTTCAGGGGCCGCTGCTGATCGCCGGCGCCCCCGCCGACGACCTGCTCGGCCAGTTGCCTCAGGCCCAGGCCTGGACCTGGCATGCCG < 3:24356/148‑1 TCGCCGGCGCCCCCGCCGACGACCTGCTCGGCCAGTTGCCTCAGGCCCAGGCCTGGACCTGGCATGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTG > 5:203738/1‑149 GCGCCCCCGCCGACGACCTGCTCGGCCAGTTGCCTCAGGCCCAGGCCTGGACCTGGCATGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAA > 4:70140/1‑148 CAGTTGCCTCAGGCCCAGGCCTGGACCTGGCATGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTATCAGAGGCGGGC < 3:70140/149‑1 CCTCAGGCCCAGGCCTGGACCTGGCATGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGG < 6:203738/149‑1 CGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCG > 6:72974/1‑149 GATCAGCAGCGGCCCCGGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGA < 8:109110/149‑1 GCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAG < 3:168827/149‑1 TTCCAGGAGACGTCGTCCATGGACCCGCGCAGTGAAGTGTTGCTCCGTCAGGCAGAGCTGTTTCAGGGGCCGCTGCTGATCGCCGGCGCCCCCGCCGACGACCTGCTCGGCCAGTTGCCTCAGGCCCAGGCCTGGACCTGGCATGCCGGCGATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/877176‑877021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcgatcagCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAG > NC_002947/877102‑877249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |