New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 949735	54 (1.050)	3 (0.060)	3/242	NT	5.7%	intergenic (+70/‑490)	dsbB/cyoA	disulfide bond formation protein B/cytochrome bo terminal oxidase subunit II
	?	NC_002947	= 949778	49 (1.020)					intergenic (+113/‑447)	dsbB/cyoA	disulfide bond formation protein B/cytochrome bo terminal oxidase subunit II

GCACTTGTGGCGTTCGTGCTGACCGCCGTCCTGGTCCCGCTCGGTATCTACCGCAATCGACGCCAGGCTTAGACAAAAGTCCCGAATTGCATGGGGTCTTTTGCACCGCATGAGAAGAGGGAAAAGTTGCGCACCGCTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/949594‑949735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttgatAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGTAGATACCGAGC  <  NC_002947/949778‑949632                                                                                                                                                                                                                                                                                                   GCACATGTGGCGTTCGTGCTGACCGCCGTCCTGGTCCCGCTCGGTATCTACCGCAATCGACGCCAGGCTTAGACAAAAGTCCCGAATTGCATGGGGTCTTTTGCACCGCATGAGAAGAGGGAAAAGTTGCGCACCGCT                                                                                                                                                         <  2:281841/138‑1                                      CGCTCGGTATCTACCGCAATCGACGCCAGGCTTAGACAAAAGTCCCGAATTGCATGGGGTCTTTTGCACCGCATGAGAAGAGGGAAAAGTTGCGCACCGCTTGATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGA                                                                                                         >  8:258699/1‑149                                       GCTCGGTATCTACCGCAATCGACGCCAGGCTTAGACAAAAGTCCCGAATTGCATGGGGTCTTTTGCACCACATGAGAAGAGGGAAAAGTTGCGCACCGCTTGATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGAT                                                                                                        <  5:118930/149‑1                                                   CCGCAATCGACGCCAGGCTTAGACAAAAGTCCCGAATTGCATGGGGTCTTTTGCACCGCATGAGAAGAGGGAAAAGTTGCGCACCGCTTGATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGT                                                                                                <  7:258699/145‑1                                                                                                                                      CCGCTTGATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGTAGA          >  7:116373/1‑148                                                                                                                                          TTGATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGTAGAT         >  1:295017/1‑145                                                                                                                                          TTGATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGTAGAT         <  2:295017/145‑1                                                                                                                                            GATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGT             >  5:247300/1‑139                                                                                                                                            GATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGT             <  6:247300/139‑1                                                                                                                                             ATAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGTAGATACCGAGC  >  3:300358/1‑149                                                                                                                                                                                                                                                                                                   GCACTTGTGGCGTTCGTGCTGACCGCCGTCCTGGTCCCGCTCGGTATCTACCGCAATCGACGCCAGGCTTAGACAAAAGTCCCGAATTGCATGGGGTCTTTTGCACCGCATGAGAAGAGGGAAAAGTTGCGCACCGCTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/949594‑949735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcttgatAGGCCTCAAAGCCGCATCCTGCAAGGCCTGCGGATTGATCTGGATCAAGCGGTGCGCAACTTTTCCCTCTTCTCATGCGGTGCAAAAGACCCCATGCAATTCGGGACTTTTGTCTAAGCCTGGCGTCGATTGCGGTAGATACCGAGC  <  NC_002947/949778‑949632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.