New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1191508 =	56 (1.080)	4 (0.090) +CTGGTTCTGAAACCAGTGA	4/222	NT	8.9%	intergenic (+64/+66)	xcpX/upxB	type II secretion system protein K/phosphatase
	?	NC_002947	= 5207717	40 (0.770)					intergenic (+55/+59)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

TTCGACGGTGGTGATCCAGCGTATTGATGGTGGGGAGATCGGGACCGTTTGATCCCGTGCCGGTCAGCCAACTTTTGCTGGCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1191625‑1191508 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCCCCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC  <  NC_002947/5207717‑5207682                                                                                                                       |||||||||||||||||||                                     TTCGACGGTGGTGATCCAGCGTATTGATGGTGGGGAGATCGGGACCGTTTGATCCCGTGCCGGTCAGCCAACTTTTGCTGGCTGTACCGACCTCTTAGCGGGCAAATCCGCCCCTACGCTGGTTCTGAAACCAGTGAACCCCCCGTAG                           >  8:182068/1‑148                          GATGGTGGGGAGATCGGGACCGTTTGATCCCGTGCCGGTCAGCCAACTTTTGCTGGCTGTACCGACCTCTTAGCGGGCAAATCCGCCCCTACGCTGGTTCTGAAACCAGTGAACCCCCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC  <  7:182068/148‑1                                 GGGAGATCGGGACCGTTTGATCCCGTGCCGGTCAGCCAACTTTTGCTGGCTGTACCGGCCTCTTCGCGGGCAAATCCGCCCCTACGCTGGTTCTGAAACCAGTGAACCCCCCGTAGGAGCGGGCTTGCCCGCGAAGAGG    <  3:166025/139‑1                                 GGGAGATCGGGACCGTTTGATCCCGTGCCGGTCAGCCAACTTTTGCTGGCTGTACCGGCCTCTTCGCGGGCAAATCCGCCCCTACGCTGGTTCTGAAACCAGTGAACCCCCCGTAGGAGCGGGCTTGCCCGCGAAGAGG    >  4:166025/1‑139                                                                                                                       |||||||||||||||||||                                     TTCGACGGTGGTGATCCAGCGTATTGATGGTGGGGAGATCGGGACCGTTTGATCCCGTGCCGGTCAGCCAACTTTTGCTGGCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1191625‑1191508 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCCCCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC  <  NC_002947/5207717‑5207682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.