New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1191508 =	56 (1.080)	4 (0.090) +CTGGTTCTGAAACCAGTGA	4/222	NT	8.9%	intergenic (+64/+66)	xcpX/upxB	type II secretion system protein K/phosphatase
	?	NC_002947	= 5207717	40 (0.770)					intergenic (+55/+59)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

CAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCAC  >  NC_002947/5207572‑5207859                                                                                                                                                  |                                                                                                                                               cAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATc                                                                                                                                             <  3:118663/149‑1 (MQ=255) cAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCCGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTAt                                                                                                                                              >  5:100597/1‑148 (MQ=255)          tGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCtg                                                                                                                                    >  5:160607/1‑149 (MQ=255)               cccTGCAGGCGCGTGAAGTGACGAGACCGCGCAATCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGAGGGCAAGCCCGCTCCTAAGGGGCGTATCACAACCCTGTGCt                                                                                                                                >  5:182298/1‑148 (MQ=255)                    cAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGc                                                                                                                           <  3:31208/148‑1 (MQ=255)                       gcgcGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAGGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGtt                                                                                                                       <  8:84106/149‑1 (MQ=255)                       gcgcGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGtt                                                                                                                       <  4:6466/149‑1 (MQ=255)                         gcgTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGttt                                                                                                                      >  2:122071/1‑148 (MQ=255)                         gcgTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGttt                                                                                                                      >  6:111071/1‑148 (MQ=255)                                 tGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGtttt                                                                                                                     <  1:125462/141‑1 (MQ=255)                                 tGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGtttt                                                                                                                     >  2:125462/1‑141 (MQ=255)                                   ccGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGaa                                                                                                             >  5:257285/1‑147 (MQ=255)                                   ccGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGaa                                                                                                             >  1:76396/1‑147 (MQ=255)                                       gCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGTcc                                                                                                       >  5:89170/1‑149 (MQ=255)                                          cgcgCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCgg                                                                                                     >  7:131252/1‑148 (MQ=255)                                          cgcgCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGt                                                                                                    <  6:257285/149‑1 (MQ=255)                                          cgcgCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGt                                                                                                    <  2:76396/149‑1 (MQ=255)                                                         gcgagcTGGCGGCTGAAGGCGATTTCAGCCTGTAAGGTTTGGGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCACTCCTACGGGGGGTAGCACCACCCTGTGCTAACGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGAt                                                                                     <  5:257136/149‑1 (MQ=39)                                                                   tgctgAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGTGAAGAGGCCgg                                                                                                     >  7:306401/1‑123 (MQ=255)                                                                   tgctgAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGTGAAGAGGCCgg                                                                                                     <  8:306401/123‑1 (MQ=255)                                                                      tgAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCggg                                                                        >  1:222476/1‑149 (MQ=255)                                                                        aaGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCg                                                                                                      <  6:305707/117‑1 (MQ=255)                                                                        aaGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCg                                                                                                      >  5:305707/1‑117 (MQ=255)                                                                             gATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATc                                                                 <  1:122071/149‑1 (MQ=255)                                                                               tttCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGa                                                               <  3:186984/149‑1 (MQ=255)                                                                                 tCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGTCCGGTACCGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGAc                                                              <  6:89170/148‑1 (MQ=255)                                                                                                    ttGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAAcc                                                >  8:72786/1‑143 (MQ=255)                                                                                                    ttGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAAcc                                                <  7:72786/143‑1 (MQ=255)                                                                                                      ggCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCAACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTATACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTATCCCAGGTCGAAATCGACTTCACCCCGCCACCCCTGccac                                        >  8:59951/1‑147 (MQ=255)                                                                                                       gCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTAGCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCACCCCCTGCCCCg                                       >  1:217876/1‑149 (MQ=255)                                                                                                           tGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCtt                                    >  7:240002/1‑148 (MQ=255)                                                                                                           tGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTc                                   <  7:59951/149‑1 (MQ=255)                                                                                                               ggCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTtcactggtttcagaaccagcgtaggggcggatttgcccgctaagaggtcggtacagccagcaaaagttggctgaccggcacgggatcaaacggtcccgatctccccaccatc                                <  7:182068‑M2/148‑113 (MQ=255)                                                                                                               ggCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATaa                               <  2:311914/149‑1 (MQ=255)                                                                                                                gCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATaa                               <  8:131252/148‑1 (MQ=255)                                                                                                                 ccTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTtcactggtttcagaaccagcgtaggggcggatttgcccgcgaagaggccggtacagccagcaaaagttggctgaccggcacgggatcaaacggtcccgatctccc                                       <  3:166025‑M2/139‑106 (MQ=255)                                                                                                                 ccTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTtcactggtttcagaaccagcgtaggggcggatttgcccgcgaagaggccggtacagccagcaaaagttggctgaccggcacgggatcaaacggtcccgatctccc                                       >  4:166025‑M2/1‑34 (MQ=255)                                                                                                                  ctctTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGcc                            >  3:77483/1‑149 (MQ=255)                                                                                                                       cgcgGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGca                        <  8:240002/148‑1 (MQ=255)                                                                                                                             cAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATtctc                 <  5:111071/149‑1 (MQ=255)                                                                                                                                        cTACGGGGGGTtcactggtttcagaaccagcgtaggggcggatttgcccgctaagaggtcggtacagccagcaaaagttggctgaccggcacgggatcaaacggtcccgatctccccaccatcaatacgctggatcaccaccgtcgaa       >  8:182068‑M2/1‑11 (MQ=255)                                                                                                                                        cTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCGTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAgc      >  8:176815/1‑149 (MQ=255)                                                                                                                                        cTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAgc      >  2:216591/1‑149 (MQ=255)                                                                                                                                         tACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAgcg     >  8:90899/1‑149 (MQ=255)                                                                                                                                           cGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAgcgc    <  6:100597/148‑1 (MQ=255)                                                                                                                                            ggggggTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCAc  >  8:31594/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                               CAGCCTGGATGAAGCCCTGCAGGCGCGTGAAGTGCCGAGCCCGCGCAAGCCGCTGAGCGAGCTGGCTGCTGAAGGCGATTTCAGCCTGTAAGGTTTGTGTTGGCAGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGGGGGTATCACCACCCTGTGCTAAAGCGGTTTTACCGCGAAGAGGCCGGTACAGGCCGCAGCGATCAGTAGCCCCGGGCGAAATCGACTTCACCCCGCAACCCCTGCCCCGCTTCATAAGCCCGCACATTCTCGACAAACAAGCGCAC  >  NC_002947/5207572‑5207859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.