New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 141351063 (1.220)7 (0.150) 6/242 NT 10.8% coding (387/474 nt) PP_1235 AhpC/TSA family protein
?NC_002947 = 1413530 57 (1.190)coding (367/474 nt) PP_1235 AhpC/TSA family protein

CAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1413354‑1413510
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcaccTTCCTGATCGACAAGGACGGGGTGCTGCGCCAGGAATGGCGTGGCGTGAAAGTGCCCGGGCATGTGGATGCCGTATTGGCGGCCGCCCAAGCCTTGAACAAGGCTTGAAATTGAATGGGGCTGCCTTGCAGCCCCAATTACA  <  NC_002947/1413530‑1413389
                                                                                                                                                                                                                                                                                                           
CAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGC                                                                                                                                                        >  4:40123/1‑149
                                     TAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCTTCCTGATCGACAAGGACGGGGTGCTGC                                                                                                                    <  4:48044/148‑1
                                      AATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCTTCCTGATCGACAAGGACGGGGTGCTGCGC                                                                                                                  >  1:156259/1‑149
                                      AATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCTTCCTGATCGACAAGGACGGGGTGCTGCG                                                                                                                   <  3:40123/148‑1
                                       ATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCTTCCTGATCGACAAGGACGGGGTGCTGCGC                                                                                                                  <  2:156259/148‑1
                                       ATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCTTCCTGATCGACAAGGACGGGGTGCTGCGC                                                                                                                  <  8:265492/148‑1
                                                                                TCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCTTCCTGATCGACAAGGACGGGGTGCTGCGCC                                                                                                                 <  7:150813/108‑1
                                                                                TCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCTTCCTGATCGACAAGGACGGGGTGCTGCGCC                                                                                                                 >  8:150813/1‑108
                                                                                                                                                      CAGCACCTTCCTGATCGACAAGGACGGGGTGCTGCGCCAGGAATGGCGTGGCGTGAAAGTGCCCGGGCATGTGGATGCCGTATTGGCGGCCGCCCAAGCCTTGAACAAGGCTTGAAATTGAATGGGGCTGCCTTGCAGCCCCAATTACA  <  5:56265/149‑1
                                                                                                                                                      CAGCACCATCCTGATCGACAAGCACGGGGTGCTGCGCCAGGAATGGCGTGGCGTGAAAGTGCCCGGGCATGTGGATGCCGTATTGGCGGCCGCCCAAGCCTTGAACAAGGCTTGAAATTGAATGGGGCTGCCTTGCAGCCCCAATTACA  <  8:57256/149‑1
                                                                                                                                                                                                                                                                                                           
CAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1413354‑1413510
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcaccTTCCTGATCGACAAGGACGGGGTGCTGCGCCAGGAATGGCGTGGCGTGAAAGTGCCCGGGCATGTGGATGCCGTATTGGCGGCCGCCCAAGCCTTGAACAAGGCTTGAAATTGAATGGGGCTGCCTTGCAGCCCCAATTACA  <  NC_002947/1413530‑1413389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.