| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2403799 = | 73 (1.410) | 5 (0.100) | 4/240 | NT | 6.6% | coding (426/1209 nt) | PP_2106 | ammonium transporter |
| ? | NC_002947 | 2403860 = | 75 (1.570) | coding (487/1209 nt) | PP_2106 | ammonium transporter | |||||
CATCGCGGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2403956‑2403799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgttccacGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGG > NC_002947/2403860‑2404004 gATCGCGGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTA < 7:23446/148‑1 ATCGCGGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTAC < 3:294600/149‑1 ATCGCGGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTAC < 4:293371/149‑1 TCGCGGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACC < 6:180389/149‑1 GCGGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGT < 6:297934/149‑1 GGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTC < 4:138491/149‑1 CGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGTCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGG > 8:195469/1‑149 CGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGG > 2:154704/1‑146 CGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGG < 1:154704/146‑1 GTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTG < 4:297368/121‑1 GTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTG > 3:297368/1‑121 GTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGC > 2:263942/1‑149 TTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCT < 4:260194/149‑1 CCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGTGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGG > 3:110452/1‑149 CCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGG > 6:222064/1‑149 CCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTG < 5:60805/148‑1 CACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGG > 5:132183/1‑142 CACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGG < 6:132183/142‑1 ACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGG > 7:151194/1‑60 ACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGG < 8:151194/60‑1 CATCGCGGTACCGCCCACGGCGCGCGCCCAGCAACAGCACCGCCGCCAGCGCCAGCCAGCCCCCCATGGCGTGTACCACCACAGACCCGGCAAAGTCGTGGAACGGTGCGCCGAAGCGTGCCTGCAGCCAAGCCTGTAGGCCCAGATTACCGTTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2403956‑2403799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgttccacGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGCGGTACCGCGATGGGCGTTTGGTGGCTTTTGCGCCATCGAGCATTCCCTTTCTGGCGCTGG > NC_002947/2403860‑2404004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |