| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2521628 | 80 (1.550) | 5 (0.100) | 5/246 | NT | 6.2% | coding (2879/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | = 2521668 | 76 (1.560) | coding (2919/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein | |||||
TGGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2521475‑2521628‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgaAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGTCAACCTGCGGGCGGCGCGTCGCCCCTCCTGCAACTCGGCACCGACCCAGCGGTTGAGGTACAGCACTAGCTGGTCATGCGCTTCCTGCAGTTCTACCA < NC_002947/2521668‑2521523 TGGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACG < 1:297675/149‑1TGGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACG > 3:63765/1‑149TGGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACG < 3:264121/149‑1TGGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGAC < 2:4601/148‑1TGGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCACATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACG < 8:220550/149‑1 GGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGG > 2:328133/1‑149 TGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGA > 3:269709/1‑148 TGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGA > 2:121916/1‑148 gcgCGCAGCGAGTCTTGGAGCGCCTGGTAGAACTTGAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACG < 4:112531/122‑1 GCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTACTGCTGTACCTCAACCGCAGGGTCGGTCCCGAGTTGCAGGAGCGGCGACGCGCCGCCCGCAGGTTGACG > 3:112531/1‑125 CAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGAAACAGGCTCGCCCTGCAGTCGC > 3:78437/1‑147 AGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCG < 6:209504/149‑1 CTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCACGCAGGTTGACGGCCGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGTCAA < 4:78437/149‑1 GCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGT < 2:280626/135‑1 GCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGT > 1:280626/1‑135 CGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGTCAACCTGCGGGCGGCGCGTCGCCCCTCCTGCAACTCGGCACCGACCCAGCGGTTGAGGTACAGCACTAGCTGGTCATGCGCTTCCTGCAGTTCTACCA < 2:87840/149‑1 CGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGTCAACCTGCGGGCGGCGCGTCGCCCCTCCTGCAACTCGGCACCGACCCAGCGGTTGAGGTACAGCACTAGCTGGTCATGCGCTTCCTGCAGTTCTAC > 5:196588/1‑147 CGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGTCAACCTGCGGGCGGCGCGTCGCCCCTCCTGCAACTCGGCACCGACCCAGCGGTTGAG > 3:49238/1‑108 CGAAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGTCAACCTGCGGGCGGCGCGTCGCCCCTCCTGCAACTCGGCACCGACCCAGCGGTTGAG < 4:49238/108‑1 TGGAGCTGGCGCGCGTGCAACAAGGCCCGCAGCCAGTCTTCGAGCGCCTGGTAGAACTGCAGGAAGCGCATGACCAGCTAGTGCTGTACCTCAACCGCTGGGTCGGTGCCGAGTTGCAGGAGGGGCGACGCGCCGCCCGCAGGTTGACGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2521475‑2521628‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgaAACAGGCTCGCCCTGCAGTCGCCAGGCTCGCAGGATGCTGTCGGCCGTCAACCTGCGGGCGGCGCGTCGCCCCTCCTGCAACTCGGCACCGACCCAGCGGTTGAGGTACAGCACTAGCTGGTCATGCGCTTCCTGCAGTTCTACCA < NC_002947/2521668‑2521523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |