New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2542061 =	55 (1.060)	3 (0.060)	3/250	NT	5.4%	coding (595/993 nt)	PP_2234	AraC family transcriptional regulator
	?	NC_002947	2542124 =	52 (1.050)					coding (658/993 nt)	PP_2234	AraC family transcriptional regulator

CAGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2542213‑2542061 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGCGCGGGGCTGGAGGCGCGCACTTTCTTGCGGCGCTTTCGTGCCGCTACCGGGCTGCGCCCGACCGA  >  NC_002947/2542124‑2542269                                                                                                                                                                                                                                                                                                             CAGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGA                                                                                                                                                        >  7:242415/1‑149    CCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGG                                                                                                                                                     >  7:81559/1‑149      CCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGC                                                                                                                                                    >  5:256504/1‑148                                                                                         TCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGCGCG                                                                >  5:198355/1‑149                                                                                            CCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGCGCGGGG                                                             >  1:22798/1‑149                                                                                                  TCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGCGCGGGGCTGGAG                                                       <  2:22798/149‑1                                                                                                                                                       GGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGCGCGGGGCTGGAGGCGCGCACTTTCTTGCGGCGCTTTCGTGCCGCTACCGGGCTGCGCCCGACCGA  <  7:184598/149‑1                                                                                                                                                       GGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGCGCGGGGCTGGAGGCGCGCACTTTCTTGCGGCGCTTTCGTGCCGCTACCGGGCTGCGCCCGACC    >  4:180117/1‑147                                                                                                                                                                                                                                                                                                             CAGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2542213‑2542061 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGCGCGGGGCTGGAGGCGCGCACTTTCTTGCGGCGCTTTCGTGCCGCTACCGGGCTGCGCCCGACCGA  >  NC_002947/2542124‑2542269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.