New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3992148	48 (0.930)	3 (0.060)	3/246	NT	5.8%	coding (921/1446 nt)	PP_3518	hypothetical protein
	?	NC_002947	= 3992171	52 (1.060)					coding (898/1446 nt)	PP_3518	hypothetical protein

TTTGCTCGCGGGCCTGACGGTTACTGGTAGCCGGCCGTTCGATACCTGCGCGGTCCATCGATGCCCTGGCTTTGTCTCGGGCCTGGGCCCGTTGGGCGTCGTCGCCGCGGAACGCGGTGCGCTGAGTGGCACCGTCCAGTTGGCGGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3991997‑3992148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatacCGCGACTCTCGCAGCCGTCAGCAGTATGGCCGCCAACTGGACGGTGCCACTCAGCGCACCGCGTTCCGCGGCGACGACGCCCAACGGGCCCAGGCCCGAGACAAAGCCAGGGCATCGATGGACCGCGCAGGTATCGAACGGCCGG  <  NC_002947/3992171‑3992027                                                                                                                                                                                                                                                                                                           TTTGCTCGCGGGCCTGACGGTTACTGGTAGCCGGCCGTTCGATACCTGCGCGGTCCATCGATGCCCTGGCTTTGTCTCGGGCCTGGGCCCGTTGGGCGTCGTCGCCGCGGAACGCGGTGCGCTGAGTGGCACCGTCCAGTTGGCGGCCA                                                                                                                                                      <  2:11720/149‑1   TGCTCGCGGGCCTGACGGTTACTGGTAGCCGGCCGTTCGATACCTGCGCGGTCCATCGATGCCCTGGCTTTGTCTCGGGCCTGGGCCCGTTGGGCGTCGTCGCCGCGGAACGCGGTGCGCTGAGTGGCACCGTCCAGTTGGCGGCCATA                                                                                                                                                    >  7:129394/1‑149                                     GTTCGATACCTGCGCGGTCCATCGATGCCCTGGCTTTGTCTCGGGCCTGGGCCCGTTGGGCGTCGTCGCCGCGGAACGCGGTGCGCTGAGTGGCACCGTCCAGTTGGCGGCCATACCGCGACTCTCGCAGCCGTCAGCAGTATGGCCGC                                                                                                                  <  1:309819/149‑1                                                                                          CGTTGGGCGTCGTCGCCGCGGAACGCGGTGCGCTGAGTGGCACCGTCCAGTTGGCGGCCATACCGCGACTCTCGCAGCCGTCAGCAGTATGG                                                                                                                      <  1:25447/92‑1                                                                                          CGTTGGGCGTCGTCGCCGCGGAACGCGGTGCGCTGAGTGGCACCGTCCAGTTGGCGGCCATACCGCGACTCTCGCAGCCGTCAGCAGTATGG                                                                                                                      >  2:25447/1‑92                                                                                                                                                   CCATACCGCGACTCTCGCAGCCGTCAGCAGTATGGCCGCCAACTGGACGGTGCCACTCAGCGCACCGCGTTCCGCGGCGACGACGCCCAACGGGCCCAGGCCCGAGACAAAGCCAGGGCATCGATGGACCGCGCAGGTATCGAACGGCC    >  7:235002/1‑149                                                                                                                                                     ATACCGCGACTCTCGCAGCCGTCAGCAGTATGGCCGCCAACTGGACGGTGCCACTCAGCGCACCGCGTTCCGCGGCGACGACGCCCAACGGGCCCAGGCCCGAGACAAAGCCAGGGCATCGATGGACCGCGCAGGTATCGAACGGCCGG  >  6:182826/1‑149                                                                                                                                                      TACCGCGACTCTCGCAGCCGTCAGCAGTATGGCCGCCAACTGGACGGTGCCACTCAGCGCACCGCGTTCCGCGGCGACGACGCCCAACGGGCCCAGGCCCGAGACAAAGCCA                                      <  5:168013/112‑1                                                                                                                                                      TACCGCGACTCTCGCAGCCGTCAGCAGTATGGCCGCCAACTGGACGGTGCCACTCAGCGCACCGCGTTCCGCGGCGACGACGCCCAACGGGCCCAGGCCCGAGACAAAGCCA                                      >  6:168013/1‑112                                                                                                                                                                                                                                                                                                           TTTGCTCGCGGGCCTGACGGTTACTGGTAGCCGGCCGTTCGATACCTGCGCGGTCCATCGATGCCCTGGCTTTGTCTCGGGCCTGGGCCCGTTGGGCGTCGTCGCCGCGGAACGCGGTGCGCTGAGTGGCACCGTCCAGTTGGCGGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3991997‑3992148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatacCGCGACTCTCGCAGCCGTCAGCAGTATGGCCGCCAACTGGACGGTGCCACTCAGCGCACCGCGTTCCGCGGCGACGACGCCCAACGGGCCCAGGCCCGAGACAAAGCCAGGGCATCGATGGACCGCGCAGGTATCGAACGGCCGG  <  NC_002947/3992171‑3992027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.