New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4013887 =	37 (0.720)	7 (0.150)	7/242	NT	15.7%	coding (229/519 nt)	PP_3541	MgtC family transporter
	?	NC_002947	4013931 =	41 (0.850)					coding (185/519 nt)	PP_3541	MgtC family transporter

CTTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4014043‑4013887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGA  >  NC_002947/4013931‑4014072                                                                                                                                                                                                                                                                                                               CTTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑A                                                                                                                                                        >  5:253050/1‑149     TGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAA                                                                                                                                                    <  3:220096/149‑1         CTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGG                                                                                                                                                <  8:181562/149‑1                                                                                                                 CCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGC                                          >  3:179177/1‑147                                                                                                                  CCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAA                                                           <  1:18367/129‑1                                                                                                                  CCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAA                                                           >  2:18367/1‑129                                                                                                                   CTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCA                                                   <  1:25507/136‑1                                                                                                                   CTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCA                                                   >  2:25507/1‑136                                                                                                                         ATGCTGGCACCGAGCATGGCGGGGGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCA                                   >  2:18592/1‑148                                                                                                                            CTGGCACCGAGCATGGCGGGGGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAG                               <  1:18592/149‑1                                                                                                                                                       ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGT    <  4:179177/149‑1                                                                                                                                                       ATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGT    <  7:181562/149‑1                                                                                                                                                          AACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGA  >  1:50138/1‑148                                                                                                                                                                                                                                                                                                               CTTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCC‑G‑ATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4014043‑4013887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGA  >  NC_002947/4013931‑4014072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.