New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4013887 = | 37 (0.720) | 7 (0.150) | 7/242 | NT | 15.7% | coding (229/519 nt) | PP_3541 | MgtC family transporter |
? | NC_002947 | 4013931 = | 41 (0.850) | coding (185/519 nt) | PP_3541 | MgtC family transporter |
GGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATCGGC > NC_002947/4013785‑4014079 | ggCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCa < 3:12573/149‑1 (MQ=255) ggCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCa < 6:12891/149‑1 (MQ=255) gctgatggctgctgtgcttggcgcagtactgggcttcgagcgcgaacacaagggcaagtctgccggggtgcgtacccacatgctggtgtcgctgggcgctgcCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAggg > 3:179177‑M1/103‑147 (MQ=255) ccTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAgcg > 3:158965/1‑149 (MQ=255) aCTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGac < 2:3376/148‑1 (MQ=255) tGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGCTACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGacac > 6:88092/1‑148 (MQ=255) gtgtTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAg > 2:210643/1‑149 (MQ=255) gtgtTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAg < 6:174390/149‑1 (MQ=255) tGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCAtgtg > 1:179756/1‑149 (MQ=255) ccGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGt < 4:99674/149‑1 (MQ=255) ccTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAcc > 4:228132/1‑149 (MQ=255) ttCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAcccc > 6:253050/1‑149 (MQ=255) gTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACtt < 5:88092/149‑1 (MQ=255) cACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTg > 4:43655/1‑143 (MQ=255) cACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTg < 3:43655/143‑1 (MQ=255) aCCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTtgt < 4:246991/149‑1 (MQ=255) aCCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTtgt < 1:210643/149‑1 (MQ=255) cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAccc < 4:28098/129‑1 (MQ=255) cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAccc > 3:28098/1‑129 (MQ=255) cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt > 7:293410/1‑149 (MQ=255) cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt < 8:293410/149‑1 (MQ=255) cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt > 1:180716/1‑149 (MQ=255) cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt > 3:149879/1‑149 (MQ=255) gaAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTgg > 1:37447/1‑116 (MQ=255) gaAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTgg < 2:37447/116‑1 (MQ=255) aaCCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGTGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCgcgc < 5:31441/149‑1 (MQ=255) aTACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGaa < 2:179756/149‑1 (MQ=255) cGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGcc > 5:311461/1‑148 (MQ=255) cAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCAtg > 3:148447/1‑98 (MQ=255) cAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCAtg < 4:148447/98‑1 (MQ=255) tCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGcaca < 6:311461/149‑1 (MQ=255) ccGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCAcagcag > 4:171643/1‑149 (MQ=255) ccGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCAcagcag > 2:10102/1‑149 (MQ=255) tGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGc < 8:94563/95‑1 (MQ=255) tGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGc > 7:94563/1‑95 (MQ=255) ccctgttcatgctggcaccgagcatggcgggggccgatgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGc > 3:179177‑M2/46‑147 (MQ=255) cctgttcatgctggcaccgagcatggcgggggccgatgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCaa < 1:18367‑M2/85‑1 (MQ=255) cctgttcatgctggcaccgagcatggcgggggccgatgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCaa > 2:18367‑M2/45‑129 (MQ=255) CCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAg < 8:181562‑M1/149‑1 (MQ=255) ctgttcatgctggcaccgagcatggcgggggccgatgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCAcagca > 2:25507‑M2/44‑136 (MQ=255) ctgttcatgctggcaccgagcatggcgggggccgatgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCAcagca < 1:25507‑M2/93‑1 (MQ=255) TTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGca < 3:220096‑M1/149‑1 (MQ=255) atgctggcaccgagcatggcgggggccagcatgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGca > 2:18592‑M2/40‑148 (MQ=255) ctggcaccgagcatggcgggggccagcatgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAg < 1:18592‑M2/113‑1 (MQ=255) TCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAg > 5:253050‑M1/1‑149 (MQ=255) cGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAg < 3:116897/136‑1 (MQ=255) cGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAg > 4:116897/1‑136 (MQ=255) ggCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGa > 1:197604/1‑149 (MQ=255) gCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGt < 7:69410/149‑1 (MQ=255) cTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTc < 4:149879/149‑1 (MQ=255) tCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGAttt > 6:17370/1‑138 (MQ=255) tCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGAttt < 5:17370/138‑1 (MQ=255) gTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAg > 3:185201/1‑122 (MQ=255) gTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAg < 4:185201/122‑1 (MQ=255) cAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCAt < 3:228132/149‑1 (MQ=255) atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGt < 7:181562‑M2/140‑1 (MQ=255) atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGt < 4:179177‑M2/140‑1 (MQ=255) aacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGa > 1:50138‑M2/7‑148 (MQ=255) gCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATCGGc < 2:197604/149‑1 (MQ=255) | GGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCATCGGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCATCGGTGACATCGGC > NC_002947/4013785‑4014079 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |