| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4013895 | 36 (0.700) | 5 (0.100) | 5/242 | NT | 11.8% | coding (221/519 nt) | PP_3541 | MgtC family transporter |
| ? | NC_002947 | = 4013921 | 41 (0.850) | coding (195/519 nt) | PP_3541 | MgtC family transporter | |||||
CGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTGTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4013741‑4013895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgttcatGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGCACTCAGTCGGGTGATCCAGGGCATCGTTGCCGGTATCGGTTTTCT < NC_002947/4013921‑4013841 CGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCT < 3:20550/149‑1CGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCT < 7:40749/149‑1 GTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTG < 7:135539/149‑1 GATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTGTTCAT > 5:174390/1‑149 CCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTGTTCATGCTGGCACCGAGCATGGCGGGG > 2:306189/1‑149 GTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAG < 1:28321/149‑1 AGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGCA < 8:84084/149‑1 AGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGC < 1:306189/148‑1 CCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCCATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGCACT < 5:309396/149‑1 TGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGCACTCAGTCGGGTGATCCAGGGCATCGTTGCCGGTATCGGTTTTCT > 1:166924/1‑88 TGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGCACTCAGTCGGGTGATCCAGGGCATCGTTGCCGGTATCGGTTTTCT < 2:166924/88‑1 CGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTG‑CCTGTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4013741‑4013895‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgttcatGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGCACTCAGTCGGGTGATCCAGGGCATCGTTGCCGGTATCGGTTTTCT < NC_002947/4013921‑4013841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |