New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4013895	36 (0.700)	5 (0.100)	5/242	NT	11.8%	coding (221/519 nt)	PP_3541	MgtC family transporter
	?	NC_002947	= 4013921	41 (0.850)					coding (195/519 nt)	PP_3541	MgtC family transporter

GTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCAT  >  NC_002947/4013778‑4014066                                                                                                                                                  |                                                                                                                                                  tgcgcttgctgatggctgctgtgcttggcgcagtactgggcttcgagcgcgaacacaagggcaagtctgccggggtgcgtacccacatgctggtgtcgctgggcgctgcCCTGTTCATGCTGGCCCCCGCCATGCTCGGTGCCAGCAt                                                                                                                                                 >  2:18592‑M1/110‑148 (MQ=255)        ggCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCa                                                                                                                                       <  3:12573/149‑1 (MQ=255)        ggCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCa                                                                                                                                       <  6:12891/149‑1 (MQ=255)        gctgatggctgctgtgcttggcgcagtactgggcttcgagcgcgaacacaagggcaagtctgccggggtgcgtacccacatgctggtgtcgctgggcgctgcCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAggg                                                                                                                                         >  3:179177‑M1/103‑147 (MQ=255)           ccTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAgcg                                                                                                                                    >  3:158965/1‑149 (MQ=255)                 tgctgtgcttggcgcagtactgggcttcgagcgcgaacacaagggcaagtctgccggggtgcgtacccacatgctggtgtcgctgggcgctgcCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAg                                                                                                                                           <  1:25507‑M1/43‑1 (MQ=255)                 tgctgtgcttggcgcagtactgggcttcgagcgcgaacacaagggcaagtctgccggggtgcgtacccacatgctggtgtcgctgggcgctgcCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAg                                                                                                                                           >  2:25507‑M1/94‑136 (MQ=255)                     aCTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGac                                                                                                                           <  2:3376/148‑1 (MQ=255)                       tGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGCTACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGacac                                                                                                                         >  6:88092/1‑148 (MQ=255)                         ttggcgcagtactgggcttcgagcgcgaacacaagggcaagtctgccggggtgcgtacccacatgctggtgtcgctgggcgctgcCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAgg                                                                                                                                          <  1:18367‑M1/44‑1 (MQ=255)                         ttggcgcagtactgggcttcgagcgcgaacacaagggcaagtctgccggggtgcgtacccacatgctggtgtcgctgggcgctgcCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAgg                                                                                                                                          >  2:18367‑M1/86‑129 (MQ=255)                         gtgtTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAg                                                                                                                      <  6:174390/149‑1 (MQ=255)                         gtgtTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAg                                                                                                                      >  2:210643/1‑149 (MQ=255)                               tGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCAtgtg                                                                                                                >  1:179756/1‑149 (MQ=255)                                  ccGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGt                                                                                                             <  4:99674/149‑1 (MQ=255)                                         ccTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAcc                                                                                                      >  4:228132/1‑149 (MQ=255)                                           ttCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAcccc                                                                                                    >  6:253050/1‑149 (MQ=255)                                                    gTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACtt                                                                                           <  5:88092/149‑1 (MQ=255)                                                           cACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTg                                                                                          >  4:43655/1‑143 (MQ=255)                                                           cACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTg                                                                                          <  3:43655/143‑1 (MQ=255)                                                            aCCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTtgt                                                                                   <  1:210643/149‑1 (MQ=255)                                                            aCCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTtgt                                                                                   <  4:246991/149‑1 (MQ=255)                                                              cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAccc                                                                                                     <  4:28098/129‑1 (MQ=255)                                                              cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCAccc                                                                                                     >  3:28098/1‑129 (MQ=255)                                                              cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt                                                                                 <  8:293410/149‑1 (MQ=255)                                                              cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt                                                                                 >  7:293410/1‑149 (MQ=255)                                                              cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt                                                                                 >  3:149879/1‑149 (MQ=255)                                                              cGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTgtgt                                                                                 >  1:180716/1‑149 (MQ=255)                                                                agaAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCatgaaca                                                                                                                                            >  1:166924‑M2/1‑81 (MQ=255)                                                                agaAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCatgaaca                                                                                                                                            <  2:166924‑M2/88‑8 (MQ=255)                                                                 gaAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTgg                                                                                                               <  2:37447/116‑1 (MQ=255)                                                                 gaAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTgg                                                                                                               >  1:37447/1‑116 (MQ=255)                                                                    aaCCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGTGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCgcgc                                                                           <  5:31441/149‑1 (MQ=255)                                                                         aTACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGaa                                                                      <  2:179756/149‑1 (MQ=255)                                                                             cGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGcc                                                                   >  5:311461/1‑148 (MQ=255)                                                                                cAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCAtg                                                                                                                  >  3:148447/1‑98 (MQ=255)                                                                                cAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCAtg                                                                                                                  <  4:148447/98‑1 (MQ=255)                                                                                               tCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGcaca                                                <  6:311461/149‑1 (MQ=255)                                                                                                   ccGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCAcagcag                                            >  4:171643/1‑149 (MQ=255)                                                                                                   ccGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCAcagcag                                            >  2:10102/1‑149 (MQ=255)                                                                                                          aGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCatgaacagggcactcagtcgggtgatccagggcatcgttgccggtatgggttttctcggtgcgggtaccattctgaagggtaacggccagaacaccagtcatgtgaaggg                                     <  5:309396‑M2/149‑111 (MQ=255)                                                                                                            tGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCatgaacaggcactcagtcgggtgatccagggcatcgttgccggtatcggttttctcggtgcgggtaccattctgaagggtaacggccagaacaccagtcatgtgaagggcct                                   <  8:84084‑M2/149‑113 (MQ=255)                                                                                                            tGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGc                                                                                         <  8:94563/95‑1 (MQ=255)                                                                                                            tGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGc                                                                                         >  7:94563/1‑95 (MQ=255)                                                                                                             gCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCatgaacaggcactcagtcgggtgatccagggcatcgttgccggtatcggttttctcggtgcgggtaccattctgaagggtaacggccagaacaccagtcatgtgaagggcct                                   <  1:306189‑M2/148‑113 (MQ=255)                                                                                                              CCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAg                                 <  8:181562‑M1/149‑1 (MQ=255)                                                                                                               cTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCatgaacaggcactcagtcgggtgatccagggcatcgttgccggtatcggttttctcggtgcgggtaccattctgaagggtaacggccagaacaccagtcatgtgaagggcctgac                                <  1:28321‑M2/149‑116 (MQ=255)                                                                                                                  TTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGca                             <  3:220096‑M1/149‑1 (MQ=255)                                                                                                                      T‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAg                         >  5:253050‑M1/1‑149 (MQ=255)                                                                                                                        c‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAg                                     >  4:116897/1‑136 (MQ=255)                                                                                                                        c‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAg                                     <  3:116897/136‑1 (MQ=255)                                                                                                                          ggCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGa                       >  1:197604/1‑149 (MQ=255)                                                                                                                             ccccGCCATGCTCGGTGCCAGCatgaacaggcactcagtcgggtgatccagggcatcgttgccggtatcggttttctcggtgcgggtaccattctgaagggtaacggccagaacaccagtcatgtgaagggcctgacgaccgctgccgg                    >  2:306189‑M2/1‑22 (MQ=255)                                                                                                                                 gCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGt                <  7:69410/149‑1 (MQ=255)                                                                                                                                       cTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTc          <  4:149879/149‑1 (MQ=255)                                                                                                                                        tCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGAttt                    <  5:17370/138‑1 (MQ=255)                                                                                                                                        tCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGAttt                    >  6:17370/1‑138 (MQ=255)                                                                                                                                           gTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAg                                 >  3:185201/1‑122 (MQ=255)                                                                                                                                           gTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAg                                 <  4:185201/122‑1 (MQ=255)                                                                                                                                               cAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCAt  <  3:228132/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTGTTCAT‑C‑GGCCCCCGCCATGCTCGGTGCCAGCATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCGCACAAGGATTTGCGTCACCTCGCGCTCAT  >  NC_002947/4013778‑4014066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.