New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4475792 =	54 (1.050)	5 (0.100)	4/242	NT	9.9%	coding (143/336 nt)	PP_3965	transposase
	?	NC_002947	4475866 =	41 (0.850)					coding (69/336 nt)	PP_3965	transposase

GGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGGTGATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4475947‑4475792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggctaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC  >  NC_002947/4475866‑4476011                                                                                                                                                                                                                                                                                                                GGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGGTGATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCC                                                                                                                                                           >  5:64744/1‑149   GCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGGTGATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGG                                                                                                                                                         >  7:183945/1‑149                     GCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGGTGATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGG                                                                                                                                                         >  7:26340/1‑131                     GCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGGTGATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGG                                                                                                                                                         <  8:26340/131‑1                                                                                       CCCGGGTGATTGCGGTGTTTGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTTGCCAATCGCCGGGCCAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAG                                                                     >  3:299271/1‑149                                                                                       CCCGGGTGATTGCGGTGTTTGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTTGCCAATCGCCGGGCCAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAG                                                                     >  5:217120/1‑149                                                                                                   CGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATT                                                         >  1:101264/1‑149                                                                                                      TGTTTGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTTGCCAATCGCCGGGCCAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCG                                                      <  4:299271/149‑1                                                                                                                                            GCCAATCGCCGGGCCAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGT                 <  6:217120/148‑1                                                                                                                                                         CTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGG   >  7:61412/1‑149                                                                                                                                                          TAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGTGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC  >  5:293669/1‑149                                                                                                                                                          TAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC  >  5:278470/1‑149                                                                                                                                                           AATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGtc  >  5:181049/1‑146                                                                                                                                                           AATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC  <  3:257401/148‑1                                                                                                                                                           AATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC  >  4:87817/1‑148                                                                                                                                                                                                                                                                                                                GGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGGTGATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4475947‑4475792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggctaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC  >  NC_002947/4475866‑4476011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.