New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4475792 = | 54 (1.050) | 5 (0.100) | 4/242 | NT | 9.9% | coding (143/336 nt) | PP_3965 | transposase |
? | NC_002947 | 4475866 = | 41 (0.850) | coding (69/336 nt) | PP_3965 | transposase |
GAACTTGCCTTGGTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC > NC_002947/4475719‑4476011 | gAACTTGCCTTGGTTCAGTCTACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATg < 3:80880/149‑1 (MQ=255) gAACTTGCCTTGGTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAAt < 3:165366/148‑1 (MQ=255) gAACTTGCCTTGGTTCAGTCGACGCGCTGCCAGCCAGACACCGACACCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAAt < 6:110833/148‑1 (MQ=255) cTTGCCTTGGTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTg > 7:127521/1‑149 (MQ=255) cTTGGTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCg > 4:105461/1‑149 (MQ=255) ttGGTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCgg > 6:64744/1‑149 (MQ=255) ggTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGt < 5:135144/148‑1 (MQ=255) ggTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGt < 7:248250/148‑1 (MQ=255) cgcgCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACTGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCAt < 5:134832/149‑1 (MQ=255) gcTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTc > 2:247834/1‑149 (MQ=255) ccagccagACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCa < 1:71714/147‑1 (MQ=255) ccagACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCt > 7:201878/1‑149 (MQ=255) cacCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTg < 3:6036/149‑1 (MQ=255) acCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTgg > 6:144677/1‑149 (MQ=255) acCGACGCCATCGTGCACCAGCACTTTCATACGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCCCCCGGGCAAATGCGGTCTCCGTGCCACCGCGCATGTCCATCGGCTCGGTgg > 3:257594/1‑149 (MQ=14) gACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGgcca < 5:144677/149‑1 (MQ=255) cATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGgccagc > 1:225813/1‑146 (MQ=255) cATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGgccagc > 8:183945/1‑146 (MQ=255) cATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGccagccag < 3:105461/149‑1 (MQ=255) cACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCAt < 6:163877/149‑1 (MQ=255) cACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCAt < 2:11507/149‑1 (MQ=255) cTTTCATCCGGTTAGACCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCgg < 4:277790/149‑1 (MQ=255) tttCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGt < 2:54872/96‑1 (MQ=255) tttCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGt > 1:54872/1‑96 (MQ=255) tttCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGa > 5:10206/1‑149 (MQ=39) tCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGa < 2:225813/147‑1 (MQ=39) tCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCAtt < 6:10206/149‑1 (MQ=38) cccgggtgattgcggtgtttggtgcggcgaagccgcactgcgcttatctgtttgccaatcgccgggccaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAg > 5:217120‑M2/71‑149 (MQ=255) cccgggtgattgcggtgtttggtgcggcgaagccgcactgcgcttatctgtttgccaatcgccgggccaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAg > 3:299271‑M2/71‑149 (MQ=255) CCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGc > 7:26340‑M1/1‑131 (MQ=255) CCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGc < 8:26340‑M1/131‑1 (MQ=255) CCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGc > 7:183945‑M1/1‑149 (MQ=255) GGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGccc > 5:64744‑M1/1‑149 (MQ=255) tGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATa < 8:201878/148‑1 (MQ=37) cggtgttcggtgcggcgaagccgcactgcgcttatctgttcgccaatcgccgggctaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAAtt > 1:101264‑M2/59‑149 (MQ=255) aaCAGATAAGCGCAGTGCGGCTTCGCCGCACCGCACACCGCAATCACCCGGGCTAATGCTGTCTAGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCCGCCAGATGGCCTCGCTGCGGATCATTGAGCGAAAGCCCGAATAAATTgc > 8:259173/1‑149 (MQ=11) tgtttggtgcggcgaagccgcactgcgcttatctgtttgccaatcgccgggccaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTgcg < 4:299271‑M2/94‑1 (MQ=255) aGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGca < 7:259173/149‑1 (MQ=34) gATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGca > 6:335809/1‑148 (MQ=34) aTAAGCGCAGTGCGGCTTAGCCGCACCGAAAACCGCCAACACCCGGGCTAATGCTGTCTGGGTGCCACCGCCCATGTCCCTAGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATAATTGAGCGAAATCCCCAATAAATTTCGcaa > 6:227124/1‑147 (MQ=11) tAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCAGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACaa > 5:322927/1‑149 (MQ=21) tAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCAGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACaa > 5:318466/1‑149 (MQ=21) cAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCg < 4:204116/149‑1 (MQ=34) gCTTCGCCGCACCCAACACCGCAATCACCCGGCCTAATGCTGTCTCGGAGCCAGCGCCCATGTCCATCGGCTCGGTGGCCAGCCAGAAGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATcc > 6:113876/1‑148 (MQ=11) aCCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCGTGTACATAGGCTCGGTCGCCAGCCACATCCCAACGATCCGCATCATACAGCGAAATCCCGAATAAATTGCGCACAACCCTCCGAATCCGACGCTGGcc > 2:150818/1‑148 (MQ=11) aCCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCa > 2:76209/1‑149 (MQ=34) cGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCa > 5:152919/1‑147 (MQ=33) cGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCa < 6:152919/147‑1 (MQ=33) gAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCAGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCAttt < 6:318466/149‑1 (MQ=17) gAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCAGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCAttt < 6:322927/149‑1 (MQ=17) aaCACCGCAATCAGCCGGGCTAATGGTGTCTCGGTGCCAGGGCGCGTGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGATAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTc < 1:150818/149‑1 (MQ=11) cGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGt < 5:335809/149‑1 (MQ=32) gccaatcgccgggccaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGt < 6:217120‑M2/131‑1 (MQ=255) aaTCAGCCGTGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATTCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGAt < 8:127521/149‑1 (MQ=12) aCCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACt > 3:59271/1‑149 (MQ=32) cccGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCatc > 4:196291/1‑146 (MQ=17) ctaaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCgg > 7:61412‑M2/5‑149 (MQ=255) taaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGTGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGc > 5:293669‑M2/4‑149 (MQ=255) taaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGc > 5:278470‑M2/4‑149 (MQ=255) aaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCccgtc > 5:181049‑M2/3‑146 (MQ=255) aaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGc < 3:257401‑M2/146‑1 (MQ=255) aaTGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGc > 4:87817‑M2/3‑148 (MQ=255) | GAACTTGCCTTGGTTCAGTCGACGCGCTGCCAGCCAGACACCGACGCCATCGTGCACCAGCACTTTCATCCGGTTAGCCCGGCGATTGGCGAACAGATAAGCGCAGTGCGGCTTCGCCGCACCGAACACCGCAATCACCCGGGCTAATGCTGTCTCGGTGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGC > NC_002947/4475719‑4476011 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |