New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4927257	47 (0.910)	4 (0.080)	3/248	NT	7.8%	coding (625/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	= 4927286	50 (1.020)					coding (596/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase

CCAGCAGGGCCAGGCCCGGGCGCAGCATGTCGCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4927107‑4927257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggTGGCGCTGCAGCGGGTACTGACGCAGCTGCCGGCCAATTTCC  <  NC_002947/4927286‑4927245                                                                                                                                                                                                   CCAGCAGGGCCAGGCCCGGGCGCAGCATGTCGCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCC                                              >  2:22687/1‑149   AGCAGGGCCAGGCCCGGGCGCAGCATGTCGCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGG                                            >  1:100632/1‑149                                    TCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGTGGCGCTGCAGCGGGTACTGACGCAGCTGCCGG           <  1:22687/149‑1                                              CCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGTGGCGCTGCAGCGGGTACTGACGCAGCTGCCGGCCAATTTCC  <  1:167164/148‑1                                                   ACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCC                                              >  5:197285/1‑99                                                   ACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCC                                              <  6:197285/99‑1                                                                     TTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGTGGCGCTGCAGCGGGTACTGACGCAGCTGCCGG           >  3:281175/1‑116                                                                     TTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGTGGCGCTGCAGCGGGTACTGACGCAGCTGCCGG           <  4:281175/116‑1                                                                                                                                                                                                   CCAGCAGGGCCAGGCCCGGGCGCAGCATGTCGCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4927107‑4927257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggTGGCGCTGCAGCGGGTACTGACGCAGCTGCCGGCCAATTTCC  <  NC_002947/4927286‑4927245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.