New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4927257 | 47 (0.910) | 4 (0.080) | 3/248 | NT | 7.8% | coding (625/1113 nt) | cheBA | chemotaxis response regulator protein‑glutamate methylesterase |
? | NC_002947 | = 4927286 | 50 (1.020) | coding (596/1113 nt) | cheBA | chemotaxis response regulator protein‑glutamate methylesterase |
GCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGG > NC_002947/4927138‑4927430 | gCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCa > 2:14394/1‑149 (MQ=255) gCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCa > 7:252176/1‑149 (MQ=255) ttCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCTCg > 3:281166/1‑149 (MQ=255) gACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGa < 5:197500/147‑1 (MQ=255) gACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGa < 4:250331/147‑1 (MQ=255) gACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAg < 2:100632/148‑1 (MQ=255) aTGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑t > 5:249907/1‑149 (MQ=255) tGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑Tg < 8:252176/149‑1 (MQ=255) gCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGcca < 7:116781/149‑1 (MQ=255) gaGCTTTTGCAGTCGTTCGGCTAACGGTTTGGTGATTGCCGCCGGCTTGTGCTGGATCTACACGATCGGCG‑CCGGGTTATTGGCGGGCAGCGGCGTCAGTACCCGCTGCAGCGCGAGCGG‑CGCCCCCGTGGAGGTTCCTT‑TGGccacga < 8:10903/148‑3 (MQ=255) ttGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGAAGGGGGCCCGGGAAATTTGCCCGCCACGGCGTAAGTACCCCCATCCGCCCCCACCG‑CCCCCCCCTGGGGGTACCGATTGGccaccttt > 1:95102/1‑146 (MQ=255) cAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCACCACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAgg > 7:206804/1‑149 (MQ=255) cGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCTCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGttt < 4:281166/149‑1 (MQ=255) cGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGttt < 5:286749/149‑1 (MQ=255) gTTCGGTAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTg > 3:291294/1‑149 (MQ=255) gTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGCTCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGAGGAGGTACCGA‑TGGCAACAAGTTTGTAGGGTTTg > 8:128460/1‑149 (MQ=255) gCAATCGCTGTGGTGAAGGCCGCCGGCATGTGCCGGATCAACACGATCGGCG‑CCGGGAAATAGGCCGGCAGCTGCGGCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCtt < 6:215244/149‑1 (MQ=255) gCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCtt < 1:14394/149‑1 (MQ=255) cTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGcc > 4:300783/1‑149 (MQ=255) tttGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCg > 4:312739/1‑149 (MQ=255) gTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGa > 6:72551/1‑149 (MQ=255) gAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACt > 8:43166/1‑149 (MQ=255) ccgccgGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGGTTGCGCTTGGGTGCCGGCGACTGCGAg < 7:128460/149‑1 (MQ=255) cgccgGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAgg > 2:261930/1‑149 (MQ=255) gCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGgccgcc < 4:150458/149‑1 (MQ=255) cTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCg > 2:73699/1‑149 (MQ=255) gATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGt > 4:186279/1‑118 (MQ=255) gATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGt < 3:186279/118‑1 (MQ=255) gATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCgggg > 8:151741/1‑149 (MQ=255) aTCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGCGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGc < 1:73699/149‑1 (MQ=255) aaCACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGc < 7:151741/149‑1 (MQ=255) acacGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCt > 5:62274/1‑149 (MQ=255) acacGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCACCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCt > 8:26978/1‑149 (MQ=255) cacGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCACt > 7:128142/1‑149 (MQ=255) cacGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTg < 3:300783/149‑1 (MQ=255) gATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGGTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCAc < 8:206804/149‑1 (MQ=255) tCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACgg < 5:72551/149‑1 (MQ=255) gcg‑cCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCgg > 6:110243/1‑133 (MQ=255) gcg‑cCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCgg < 5:110243/133‑1 (MQ=255) ggAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCAccggccaatttcccggcgccgatcgtgttgatccagcacatgccggcggccttcaccaaagcgtttgccgaacgcctggacaagctgtgccgcatcagcgtcaagg < 1:167164‑M2/148‑107 (MQ=255) gCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGgc < 2:95102/148‑1 (MQ=255) ccGGCAGCTGCGTCAGTACCCGCTGCAGCGCCAccggccaatttcccggcgccgatcgtgttgatccagcacatgccggcggccttcaccaaagcgtttgccgaacgcctggacaagctgtgccgcatcagcgtcaaggaagccgaaga < 1:22687‑M2/149‑117 (MQ=255) ccGGCAGCTGCGTCAGTACCCGCTGCAGCGCCAccggccaatttcccggcgccgatcgtgttgatccagcacatgccggcggccttcaccaaagcgtttgccgaacgcctggacaa < 4:281175‑M2/116‑84 (MQ=255) ccGGCAGCTGCGTCAGTACCCGCTGCAGCGCCAccggccaatttcccggcgccgatcgtgttgatccagcacatgccggcggccttcaccaaagcgtttgccgaacgcctggacaa > 3:281175‑M2/1‑33 (MQ=255) ccGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGgcgc < 1:261930/149‑1 (MQ=255) ccGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGgc < 3:72850/147‑1 (MQ=255) ccGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGgc > 4:72850/1‑147 (MQ=255) cAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCt < 6:62274/149‑1 (MQ=255) cGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCct > 5:220069/1‑149 (MQ=255) aGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCctggct > 5:264442/1‑149 (MQ=255) cccGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGt > 7:300656/1‑148 (MQ=255) cGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTa > 7:254151/1‑147 (MQ=255) cGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTa > 2:299626/1‑147 (MQ=255) tGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGt < 4:291294/149‑1 (MQ=255) cAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGt < 6:264442/147‑1 (MQ=255) cAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGc > 5:290699/1‑149 (MQ=255) cgcCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTgg > 7:183002/1‑149 (MQ=255) | GCCGTCTTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCG‑CCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGG‑CCCCCCCGTGGAGGTACCGA‑TGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGG > NC_002947/4927138‑4927430 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |