New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5045329 =	61 (1.180)	4 (0.080)	4/240	NT	7.9%	intergenic (‑131/+50)	PP_5681/PP_4449	hypothetical protein/hypothetical protein
	?	NC_002947	5045395 =	37 (0.780)					coding (239/255 nt)	PP_4449	hypothetical protein

GGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5045392‑5045329 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAGTCACC  >  NC_002947/5045395‑5045538                                                                                                                                                                                                                  GGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCA                                                             >  7:43053/1‑149   TTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACC                                                           >  1:148937/1‑149               CACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGA                                               <  2:148937/149‑1                                                GAGCACTGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAA              <  8:43053/149‑1                                                       GTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAG       <  1:140458/149‑1                                                            ACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAGTCACC  >  5:106529/1‑149                                                                                                                                                                                                                  GGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5045392‑5045329 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAGTCACC  >  NC_002947/5045395‑5045538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.