New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5045329 =	61 (1.180)	4 (0.080)	4/240	NT	7.9%	intergenic (‑131/+50)	PP_5681/PP_4449	hypothetical protein/hypothetical protein
	?	NC_002947	5045395 =	37 (0.780)					coding (239/255 nt)	PP_4449	hypothetical protein

CCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAGTCACC  >  NC_002947/5045254‑5045538                                                                                                                                              |                                                                                                                                                ccTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGc                                                                                                                                          <  7:140075/149‑1 (MQ=255)     ttACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTc                                                                                                                                        <  7:131630/147‑1 (MQ=255)          aCGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTc                                                                                                                                   >  8:32942/1‑147 (MQ=255)          aCGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCga                                                                                                                                 <  1:327149/149‑1 (MQ=255)          aCGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCga                                                                                                                                 <  7:15832/149‑1 (MQ=255)          aCGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTACTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCga                                                                                                                                 <  8:40482/149‑1 (MQ=255)             aaaTATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGagag                                                                                                                              >  2:140458/1‑149 (MQ=255)               atatCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAgcg                                                                                                                            <  6:321689/149‑1 (MQ=255)                         tCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTc                                                                                                                  >  3:62603/1‑149 (MQ=255)                             gggtgtgGTGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTCGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGa                                                                                                              <  6:199786/147‑1 (MQ=255)                                      gATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCg                                                                                                     >  8:221677/1‑149 (MQ=255)                                          cGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCaa                                                                                                 <  7:221677/149‑1 (MQ=255)                                                 aTGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATgag                                                                                          <  4:147683/149‑1 (MQ=255)                                                  tGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGa                                                                                                              <  3:178724/128‑1 (MQ=255)                                                  tGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATgag                                                                                          >  7:272040/1‑148 (MQ=255)                                                  tGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGATGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGa                                                                                                              >  4:178724/1‑128 (MQ=255)                                                          tAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATga                                                                                           >  7:121989/1‑139 (MQ=255)                                                          tAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATga                                                                                           <  8:121989/139‑1 (MQ=255)                                                           aGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTcc                                                                                >  4:173476/1‑149 (MQ=255)                                                            gACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTg                                                                                                               <  5:169239/117‑1 (MQ=255)                                                            gACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGACGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTg                                                                                                               >  6:169239/1‑117 (MQ=255)                                                               aGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAAc                                                                            >  7:117833/1‑149 (MQ=255)                                                               aGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAAc                                                                            >  2:286677/1‑149 (MQ=255)                                                                gCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACg                                                                           <  1:286677/149‑1 (MQ=255)                                                                    cccTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCAtgt                                                                                                                       <  1:114855/101‑1 (MQ=255)                                                                    cccTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCAtgt                                                                                                                       >  2:114855/1‑101 (MQ=255)                                                                      cTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTc                                                                     <  8:117833/149‑1 (MQ=255)                                                                              ggttcgacggctagcacggagcgcctcaggaagaactgggcagcggagagcactgtcgaacctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTacca                                                             >  7:43053‑M2/65‑149 (MQ=255)                                                                                ttcgacggctagcacggagcgcctcaggaagaactgggcagcggagagcactgtcgaacctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTaccacc                                                           >  1:148937‑M2/63‑149 (MQ=255)                                                                                          ctctCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATc                                                   >  1:70390/1‑147 (MQ=255)                                                                                            cacggagcgcctcaggaagaactgggcagcggagagcactgtcgaacctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGa                                               <  2:148937‑M2/99‑1 (MQ=255)                                                                                                    cccAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTaccacc                                                           >  8:228481/1‑129 (MQ=255)                                                                                                    cccAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTaccacc                                                           <  7:228481/129‑1 (MQ=255)                                                                                                                  aGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTgg                         <  7:32942/149‑1 (MQ=255)                                                                                                                    gcgcTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGc                        >  3:279905/1‑148 (MQ=255)                                                                                                                     cgcTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGa                      <  2:70390/149‑1 (MQ=255)                                                                                                                          cGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTAGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCACGGGGTACGTCGCGGCGATTct                  <  3:173476/148‑2 (MQ=255)                                                                                                                             gagcactgtcgaacctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGaaa              <  8:43053‑M2/132‑1 (MQ=255)                                                                                                                              cTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGt                    >  2:121958/1‑142 (MQ=255)                                                                                                                              cTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGt                    <  1:121958/142‑1 (MQ=255)                                                                                                                              cTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAAc             >  5:43536/1‑149 (MQ=255)                                                                                                                                aGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGa           >  2:143818/1‑149 (MQ=255)                                                                                                                                    gtcgaacctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAg       <  1:140458‑M2/139‑1 (MQ=255)                                                                                                                                         acctaCCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAGTCAcc  >  5:106529‑M2/6‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                CCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACAGTGCTCTCCGCTGCCCAGTTCTTCCTGAGGCGCTCCGTGCTAGCCGTCGAACCTACCAGACGCTCCAGTCGAGAGCGCATGTGATTCTTGAGTTTCTTCGGCAAGGATGAGGAGTTCTTCCCAACGGTCTTCGTCTACCACCCCAGCATCCAGAATCGCCGCGACGTACCCCGTGGCGAGTCCGAAACGATAAGTCACC  >  NC_002947/5045254‑5045538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.