| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5109707 | 51 (0.990) | 4 (0.080) | 4/250 | NT | 6.8% | coding (999/1419 nt) | aroP‑II | aromatic amino acid transport protein |
| ? | NC_002947 | = 5109733 | 60 (1.210) | coding (973/1419 nt) | aroP‑II | aromatic amino acid transport protein | |||||
CCCAGTTGATCACCAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5109556‑5109707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccGAGCAGGGCGATGCCCCGGCGTCGCTGGCCAAGGT < NC_002947/5109733‑5109699 CCCAGTTGATCACCAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTTGCACGCCCCGCTTGTCGACCTTG < 6:74111/149‑1CCCAGTTGATCACCAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTG > 4:314228/1‑149 CAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTG > 7:194382/1‑136 CAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTG < 8:194382/136‑1 CACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCGAGCAGGGCGATGCCCCGG > 6:76629/1‑149 TCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCGAGCAGGGCGATGCCCCGGCGTCGCTGGCCAAG < 5:76629/149‑1 GTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCGAGCAGGGCGATGCCCCGGCGTCGCTGGCCAAGGT > 3:203551/1‑135 GTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCGAGCAGGGCGATGCCCCGGCGTCGCTGGCCAAGGT < 4:203551/135‑1 CCCAGTTGATCACCAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5109556‑5109707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccGAGCAGGGCGATGCCCCGGCGTCGCTGGCCAAGGT < NC_002947/5109733‑5109699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |