New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5109707 | 51 (0.990) | 4 (0.080) | 4/250 | NT | 6.8% | coding (999/1419 nt) | aroP‑II | aromatic amino acid transport protein |
? | NC_002947 | = 5109733 | 60 (1.210) | coding (973/1419 nt) | aroP‑II | aromatic amino acid transport protein |
ATCACCAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACTGCCCAGCAGCGAGAA > NC_002947/5109564‑5109853 | aTCACCAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCTGCGa > 6:123182/1‑149 (MQ=255) gggTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCggg < 1:123246/149‑1 (MQ=255) ggTGGCCACCACCAGAGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCAAGGCGACGAAGGTCACGGCAGCCGACAACAGGATCGACCGCACTGGCACGCCCCGCTTGTCGACCTTGGACAGCGACGCCgggt > 6:5575/1‑148 (MQ=255) gCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTTGACCTTGGCCAGCGACGCCGGGGCATc < 3:308043/149‑1 (MQ=255) cACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCgagcagggcgatgccccgg > 6:76629‑M1/1‑130 (MQ=255) cAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCt > 7:38922/1‑149 (MQ=255) tCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCgagcagggcgatgccccggcgtcgctggccaag < 5:76629‑M1/149‑34 (MQ=255) tCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATa > 3:103478/1‑149 (MQ=255) agcagTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATAcc < 2:30501/149‑1 (MQ=255) gTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCcag > 3:62818/1‑148 (MQ=255) gcgcGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCgggg < 6:253832/117‑1 (MQ=255) gcgcGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCgggg > 5:253832/1‑117 (MQ=255) cgTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCgg < 8:267290/149‑1 (MQ=255) gTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCgagcagggcgatgccccggcgtcgctggccaaggt > 3:203551‑M1/1‑100 (MQ=255) gTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCgagcagggcgatgccccggcgtcgctggccaaggt < 4:203551‑M1/135‑36 (MQ=255) cGGCATCACTTAGTTCAGCAGCACGTCGACGACGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGTGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTg < 5:5575/148‑1 (MQ=255) gCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGCACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGAGGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAg < 3:29382/149‑1 (MQ=255) tCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAg < 2:210920/149‑1 (MQ=255) tAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGc < 4:114604/148‑1 (MQ=255) agcagcACGGCGACGAAGGTCACTGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGACGGTTCATCGCCCTGCTCTGCCATACCCAGCAGCATGCGGGCGTTGCATTAGGTGCCGCtgtt < 1:74984/149‑1 (MQ=255) agcagcACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCtgtt < 3:314228/149‑1 (MQ=255) agcagcACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCtgtt < 6:332859/149‑1 (MQ=255) caCGGCGACGAAGGGCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTaca < 8:70662/149‑1 (MQ=255) gacgaAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAgcagca > 6:32032/1‑110 (MQ=255) gacgaAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAgcagca < 5:32032/110‑1 (MQ=255) gaAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCt > 8:154921/1‑86 (MQ=255) gaAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCt < 7:154921/86‑1 (MQ=255) ggTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGcgccg > 5:314531/1‑149 (MQ=255) tCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGcgccg > 1:37442/1‑147 (MQ=255) aCGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCGGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAg < 1:104170/117‑1 (MQ=255) aCGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAg > 2:104170/1‑117 (MQ=255) aGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGca < 5:31657/149‑1 (MQ=255) gCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGcac < 2:59394/149‑1 (MQ=255) acCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGaa < 4:103478/149‑1 (MQ=255) cAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCtgt > 3:111689/1‑113 (MQ=255) cAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCtgt < 4:111689/113‑1 (MQ=255) cAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGt > 2:196155/1‑149 (MQ=255) ggATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCtgttg > 2:222228/1‑113 (MQ=255) ggATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCtgttg < 1:222228/113‑1 (MQ=255) aaCGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGCCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAgg > 2:78900/1‑149 (MQ=255) aCTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGCCAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTgg > 8:119834/1‑148 (MQ=255) aCTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTgg > 1:329489/1‑148 (MQ=255) cTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCa < 8:38922/149‑1 (MQ=255) cACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCa > 2:40457/1‑149 (MQ=255) aCGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCAc > 3:226822/1‑149 (MQ=255) gCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGt > 4:108790/1‑149 (MQ=255) cccGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCa < 5:200046/140‑1 (MQ=255) cccGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCa > 6:200046/1‑140 (MQ=255) ccGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCAc > 2:330595/1‑149 (MQ=255) cGCTTGTCGACCTTGGCCTGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACt < 5:123182/149‑1 (MQ=255) cGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCa > 2:261362/1‑108 (MQ=255) cGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCa < 1:261362/108‑1 (MQ=255) cGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACt < 6:314531/149‑1 (MQ=255) ttGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCAACGTCACTGcc > 3:280619/1‑149 (MQ=255) aCCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCggccaaggtcgacaagcggggcgtgccagtgcgttcgatcctggtgtcggctgccgtgaccttcgtcgccgtgctgctgaactacctgatgccgcaaaac > 3:203551‑M2/1‑35 (MQ=255) aCCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCggccaaggtcgacaagcggggcgtgccagtgcgttcgatcctggtgtcggctgccgtgaccttcgtcgccgtgctgctgaactacctgatgccgcaaaac < 4:203551‑M2/135‑101 (MQ=255) cctcgtccAGCGACGCAGGCGCATCGCCCTTCTCGGCCATACCCAGCAGCATGCTGGCGTTGCAGTAGGTGCCGCTGTTGTACACCTTCATCGCCTCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACTGCCCagcagc < 6:192814/143‑1 (MQ=255) ccTTGGCCAGCGACGCCGGGGCAGCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGGTGCAGTAGGTGCCGCGCGTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACTGCCCagcagc < 8:268927/149‑1 (MQ=255) cTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCggccaaggtcgacaagcggggcgtgccagtgcgttcgatcctggtgtcggctgccgtgaccttcgtcgccgtgctgctgaactacctgatgccgcaaaacgcgctggaactgctga < 5:76629‑M2/149‑117 (MQ=255) ttGGCCAGCGACGCCGGCGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACTGCCCagcagc > 1:31196/1‑147 (MQ=255) gCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACAcc < 6:258413/81‑1 (MQ=255) gCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACAcc > 5:258413/1‑81 (MQ=255) gCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACTGCCCAGCAGCgaga < 1:40457/148‑1 (MQ=255) ccAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACTGCCCAGCAGCGAGaa > 2:153996/1‑148 (MQ=255) | ATCACCAGGGTGGCCACGACCAGCGACATCAGCAGTTCCAGCGCGTTTTGCGGCATCAGGTAGTTCAGCAGCACGGCGACGAAGGTCACGGCAGCCGACACCAGGATCGAACGCACTGGCACGCCCCGCTTGTCGACCTTGGCCAGCGACGCCGGGGCATCGCCCTGCTCGGCCATACCCAGCAGCATGCGGGCGTTGCAGTAGGTGCCGCTGTTGTACACCGACAGCGCCGCAGTCAGCACCACGAAGTTCAGCAGGTTGGCAGCCACGTCACTGCCCAGCAGCGAGAA > NC_002947/5109564‑5109853 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |