New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5259968	47 (0.910)	3 (0.060)	3/246	NT	6.7%	coding (510/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
	?	NC_002947	= 5260028	39 (0.800)					coding (570/1179 nt)	yqeF	acetyl‑CoA acetyltransferase

GCCTTGCCCCCTACGTGATGCCCTCGGCCCGCACCGGCCAGCGCATGGGCCATGGCCAACTGATCGATAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5259814‑5259968 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcGATCGCTGCCACTGCCTTGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTACTTGTCCACCAGGTTTTCGGCAGTGATGCCCATGTGGTAGTCATTGAAGGCATCCCACAGGCCGTCCGTGATCAT  <  NC_002947/5260028‑5259885                                                                                                                                                                                                                                                                                                             GCCTTGCCCCCTACGTGATGCCCTCGGCCCGCACCGGCCAGCGCATGGGCCATGGCCAACTGATCGATAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTAC                                                                                                                                                        <  3:289838/149‑1      GCCCCCTACGTGATGCCCTCGGCCCGCACCGGCCAGCGCATGGGCCATGGCCAACTGATCGATAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGC                                                                                                                                                     <  1:120079/147‑1                                                         CAACTGATCGATAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCGATCGCTGCCACTGCCTTGCGCTGCGATTCGGCAGCAAAGGCATCCTGCT                                                                                                >  3:308894/1‑149                                                                              ACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCGATCGCTGCCACTGCCTTGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTACT                                                                           <  4:308894/149‑1                                                                              ACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCGATCGCTGCCACTGCCTTGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTAC                                                                            <  6:16433/148‑1                                                                                                                                                      GGCCTCGATCGCTGCCACTGCCTTGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTACTTGTCCACCAGGTTTTCGGCAGTGATGCCCATGTGGTAGTCATTGAAGGCATCCCACAGG                <  5:73045/136‑1                                                                                                                                                      GGCCTCGATCGCTGCCACTGCCTTGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTACTTGTCCACCAGGTTTTCGGCAGTGATGCCCATGTGGTAGTCATTGAAGGCATCCCACAGG                >  6:73045/1‑136                                                                                                                                                       GCCTCGATCGCTGCCACTGCCTCGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTACTTGTCCACCAGGTTTTCGGCAGTGATGCCCATGTGGTAGTC                                   <  5:272375/116‑1                                                                                                                                                       GCCTCGATCGCTGCCACTGCCTCGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTACTTGTCCACCAGGTTTTCGGCAGTGATGCCCATGTGGTAGTC                                   >  6:272375/1‑116                                                                                                                                                       GCCGCGATCGCTCCCACTGCCTAGCGCTGCGATTCGGCAGCAAACGCATCCTGCTGCTCACGGCTGAGGCCGTACTTGTCCACCAGGTTTTCGGCAGTGATGCCCATGTGGTAGTCATTGAAGGCATCCCACAGGCCGTCCGTGATCAT  <  8:148278/149‑1                                                                                                                                                                                                                                                                                                             GCCTTGCCCCCTACGTGATGCCCTCGGCCCGCACCGGCCAGCGCATGGGCCATGGCCAACTGATCGATAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5259814‑5259968 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcGATCGCTGCCACTGCCTTGCGCTGCGATTCGGCAGCAAAGGCATCCTGCTGCTCACGGCTGAGGCCGTACTTGTCCACCAGGTTTTCGGCAGTGATGCCCATGTGGTAGTCATTGAAGGCATCCCACAGGCCGTCCGTGATCAT  <  NC_002947/5260028‑5259885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.