New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5259968	47 (0.910)	3 (0.060)	3/246	NT	6.7%	coding (510/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
	?	NC_002947	= 5260028	39 (0.800)					coding (570/1179 nt)	yqeF	acetyl‑CoA acetyltransferase

ATAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCGGCCTTCAAGAAGGAC  >  NC_002947/5259880‑5260175                                                                                                                                                         |                                                                                                                                                    aTAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATc                                                                                                                                                     <  5:161043/149‑1 (MQ=255) aTAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATc                                                                                                                                                     >  4:157500/1‑149 (MQ=255)   aGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATc                                                                                                                                                     >  6:7579/1‑147 (MQ=255)      aTGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCGTTTGCTGC‑‑CGAATCGCAGCGCTAGGCAGTGGGAGCGATCgcggc                                                                                                                                                <  8:148278‑M2/149‑6 (MQ=255)          tCACGGACGGCCTGTGGGATGCCTTCAATGACTACCTCATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAggccggc                                                                                                                                            >  8:180732/1‑149 (MQ=255)              ggacggCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGtt                                                                                                                                        >  7:139914/1‑149 (MQ=255)                    ccTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCgaggcc                                                                                                                                               <  5:73045‑M2/136‑7 (MQ=255)                    ccTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCgaggcc                                                                                                                                               >  6:73045‑M2/1‑130 (MQ=255)                                cTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCAccc                                                                                                                      >  6:281900/1‑149 (MQ=255)                                cTTCAATGACTACCACATGGGCATCACTGCCCAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCTGGAGAAGCCTTTTCATCAGCGAATAGCAGCGCAAGGAAATGGCACCGATCCAGGCCCGCCGAATCGACGCAGaaaa                                                                                                                           >  1:267551/1‑147 (MQ=255)                                     aTGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATc                                                                                                                 <  3:157500/149‑1 (MQ=255)                                       gACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCGAGGCAGTGGCAGCGATCgaggc                                                                                                                                                <  5:272375‑M2/116‑6 (MQ=255)                                       gACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCGAGGCAGTGGCAGCGATCgaggc                                                                                                                                                >  6:272375‑M2/1‑111 (MQ=255)                                          tACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGtgct                                                                                                            >  1:130593/1‑149 (MQ=255)                                            ccACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGtgctgc                                                                                                          >  4:211568/1‑149 (MQ=255)                                              acaTGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAC‑‑GATGCCATTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGATTCGACCCTGAAATCACCCCCATCGTGCTGCCg                                                                                                        >  4:143192/1‑149 (MQ=255)                                                aTGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGCGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCg                                                                                                        >  1:97069/1‑147 (MQ=255)                                                       tCACTGCCGAAAACCTGGTGGACAAGTACGTACTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAg                                                                                               <  5:92184/149‑1 (MQ=255)                                                       tCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAg                                                                                               <  6:42945/149‑1 (MQ=255)                                                         aCTGCGGAAAACCTGGTGGACAAGTTCGGCCTCAGCAGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGGAGCGCAAGGCAGTGGCAGCGATCGAGGCCGTCCGTTTCGACGCTGAAATCACCCGCATCGTGCTGCCGGAGAAAAAgg                                                                                              <  2:267551/148‑1 (MQ=255)                                                         aCTGCCGAAAACCTGGTGGACAAGTACGGACTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAggg                                                                                             <  4:26747/149‑1 (MQ=255)                                                          cTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGc                                                                                            <  7:180732/149‑1 (MQ=255)                                                           tGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGc                                                                                            >  2:309483/1‑148 (MQ=255)                                                              cGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGGAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGc                                                                                            <  3:53793/145‑1 (MQ=255)                                                              cGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGc                                                                                            >  4:53793/1‑145 (MQ=255)                                                                 aaaCCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGccc                                                                                      >  3:32154/1‑148 (MQ=255)                                                                        gtggACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGGAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCTCCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGttt                                                                               <  3:143192/148‑1 (MQ=255)                                                                        gtggACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGttt                                                                               <  6:133749/148‑1 (MQ=255)                                                                         tggACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGttttt                                                                             <  2:97069/149‑1 (MQ=255)                                                                           gACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGc                                                                           >  3:285389/1‑149 (MQ=255)                                                                           gACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGc                                                                           >  1:67642/1‑149 (MQ=255)                                                                             cAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGccc                                                                         <  8:139914/149‑1 (MQ=255)                                                                               aGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCgaggccgtacttgtccaccaggttttcggcagtgatgcccatgtggtagtcattgaaggcatcccacaggccgtccgt                                                                       <  4:308894‑M2/149‑79 (MQ=255)                                                                                gTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCgaggccgtacttgtccaccaggttttcggcagtgatgcccatgtggtagtcattgaaggcatcccacaggccgtccgt                                                                       <  6:16433‑M2/148‑79 (MQ=255)                                                                                   cGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGAc                                                                    <  4:306289/148‑1 (MQ=255)                                                                                   cGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGAc                                                                    <  3:184039/148‑1 (MQ=255)                                                                                      ccTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAg                                                                 >  3:116963/1‑148 (MQ=255)                                                                                      ccTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGc                                                                <  3:211568/149‑1 (MQ=255)                                                                                        tCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCaa                                                              >  3:93321/1‑149 (MQ=255)                                                                                                   cagcag‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGa                                                   <  1:309483/149‑1 (MQ=255)                                                                                                   cagcag‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGa                                                   >  1:45813/1‑149 (MQ=255)                                                                                                    agcag‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCgaggccgtacttgtccaccaggttttcggcagtgatgcccatgtggtagtcattgaaggcatcccacaggccgtccgtgatcatgctatcgatcagttg                                                  >  3:308894‑M2/1‑50 (MQ=255)                                                                                                                   tgctgc‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGa                                       <  2:67642/147‑1 (MQ=255)                                                                                                                   tgctgc‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGa                                       <  4:285389/147‑1 (MQ=255)                                                                                                                     ctgc‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTcc                                   >  8:88756/1‑149 (MQ=255)                                                                                                                      tgc‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTccc                                  >  6:5500/1‑149 (MQ=255)                                                                                                                       gc‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCt                                 >  5:280318/1‑149 (MQ=255)                                                                                                                                  cAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGATGAAATCACCCCCCTCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCACGGACACAACCGCCGAGTCCCTGGCAAAACt                        >  5:249814/1‑149 (MQ=255)                                                                                                                                         aGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCg                 <  6:280318/149‑1 (MQ=255)                                                                                                                                            cAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCGGcc              >  2:70989/1‑149 (MQ=255)                                                                                                                                                    gCGATCGATGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCGGCCTTCaagaa      <  5:7579/149‑1 (MQ=255)                                                                                                                                                     cGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCGGCCTTCaagaag     <  4:32154/149‑1 (MQ=255)                                                                                                                                                        tCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCGGCCTTCAAGAAGGAc  <  7:88756/149‑1 (MQ=255)                                                                                                                                                        tCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCGGCCTTCAAGAAGGAc  <  4:93321/149‑1 (MQ=255)                                                                                                                                                         |                                                                                                                                                    ATAGCATGATCACGGACGGCCTGTGGGATGCCTTCAATGACTACCACATGGGCATCACTGCCGAAAACCTGGTGGACAAGTACGGCCTCAGCCGTGAGCAGCAG‑‑GATGCCTTTGCTGC‑‑CGAATCGCAGCGCAAGGCAGTGGCAGCGATCGAGGCCGGCCGTTTCGACGCTGAAATCACCCCCATCGTGCTGCCGCAGAAAAAGGGCGAGCCCAAGGTTTTTGCCCGTGACGAGCAACCACGCCCGGACACCACCGCCGAGTCCCTGGCCAAACTGCGCCCGGCCTTCAAGAAGGAC  >  NC_002947/5259880‑5260175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.