New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5802409	51 (0.990)	4 (0.080)	4/252	NT	7.5%	coding (425/1239 nt)	pilQ	type IV pili biogenesis protein
	?	NC_002947	= 5802485	49 (0.980)					coding (349/1239 nt)	pilQ	type IV pili biogenesis protein

ACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5802259‑5802409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagCTGCTGCCCATTCACCACGCCAAGGCCGCCGATCTGGCGCAGTTGCTGCTGGCAGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGC  <  NC_002947/5802485‑5802399                                                                                                                                                                                                                                                ACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCG                                                                                            >  5:252818/1‑148                                                           GCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGCTGCTGCCCATTCACCACGCCAAGGCCGCCGATCTGGCGCAGTTGCTGCTGGCAGG                                 >  8:92654/1‑149                                                               CACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGCTGCTGCCCATTCACCACGCCAAGGCCGCCGATCTGGCGCAGTTGCTGCTGGCAGGCCTG                             >  6:79142/1‑149                                                                                   CCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGCTGCTGCCCATTCACCACGCCAAGGCCGCCGATCTGGCGCAGTTGCTGCTGGCAGGCCTGGAGGGTGACGGCATCCCTCC         <  5:79142/149‑1                                                                                          GTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGCTGCTGCCCATTCACCACGCCAAGGCCGCCGATCTGGCGCAGTTGCTGCTGGCAGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGC  <  7:92654/149‑1                                                                                                                                                                                                                                                ACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5802259‑5802409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagCTGCTGCCCATTCACCACGCCAAGGCCGCCGATCTGGCGCAGTTGCTGCTGGCAGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGC  <  NC_002947/5802485‑5802399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.