New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5980745 =	48 (0.930)	3 (0.060)	3/248	NT	6.8%	coding (1390/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5980780 =	36 (0.730)					coding (1425/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

GCAGGTTCAGCGTGGTGCTGCGCACCGCTGCGGGTATGGCCAGCGGTGCGCTGGTGGTGGGCGTATCGTTGCACCGGGTGAAAATCAGCAGCAGGTTGGCCGGCGCTTCAGCCAGCAGTTGGGCCAACAGTTGCCGGGTGGCGTCGTCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980898‑5980745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTG  >  NC_002947/5980780‑5980921                                                                                                                                                                                                                                                                                                          GCAGGTTCAGCGTGGTGCTGCGCACCGCTGCGGGTATGGCCAGCGGTGCGCTGGTGGTGGGCGTATCGTTGCACCGGGTGAAAATCAGCAGCAGGTTGGCCGGCGCTTCAGCCAGCAGTTGGGCCAACAGTTGCCGGGTGGCGTCGTCG                                                                                                                                                     <  4:32324/149‑1     GTTCAGCGTGGTGCTGCGCACCGCTGCGGGTATGGCCAGCGGTGCGCTGGTGGTGGGCGTATCGTTGGACCGGGTGAAAATCAGCAGCAGGTTGGCCGGCGCTTCAGCCAGCAGTTGGGCCAACAGTTGCCGGGTGGCGTCGTCGGCC                                                                                                                                                  >  3:96078/1‑148                                                                                                                   GCAGTTGGGCCAACAGTTGCCGGGTGGCGTCGTCGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGC                                              >  7:113112/1‑138                                                                                                                   GCAGTTGGGCCAACAGTTGCCGGGTGGCGTCGTCGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGC                                              <  8:113112/138‑1                                                                                                                      GTTGGGCCAACAGTTGCCGGGTGGCGTCGTCGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCT                                 >  6:130544/1‑148                                                                                                                                                     GGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTG  <  5:130544/148‑1                                                                                                                                                                                                                                                                                                          GCAGGTTCAGCGTGGTGCTGCGCACCGCTGCGGGTATGGCCAGCGGTGCGCTGGTGGTGGGCGTATCGTTGCACCGGGTGAAAATCAGCAGCAGGTTGGCCGGCGCTTCAGCCAGCAGTTGGGCCAACAGTTGCCGGGTGGCGTCGTCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980898‑5980745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTG  >  NC_002947/5980780‑5980921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.