New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5980745 =	48 (0.930)	3 (0.060)	3/248	NT	6.8%	coding (1390/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5980780 =	36 (0.730)					coding (1425/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

CCGCCAAGCCCACGCGCCTTGCGTTGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTG  >  NC_002947/5980632‑5980921                                                                                                                                                     |                                                                                                                                              ccGCCAAGCCCCCGCGCCTTGCGTTGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCaa                                                                                                                                               <  4:35448/149‑1 (MQ=255)   gCCAAGCCCACGCGCCTTGCGTTGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAAct                                                                                                                                             >  1:288263/1‑149 (MQ=255)   agcgtggtgctgcgcaccgctgcgggtatggccagcggtgcgctggtggtgggcgtatcgttgcaccgggtgaaaatcagcagcaggttggccggcgcttcagccagcagtTGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAAc                                                                                                                                              >  6:130544‑M1/112‑148 (MQ=255)     cAAGCCCACGCGCCTTGCGTTGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAActgc                                                                                                                                           <  7:122694/149‑1 (MQ=255)      aaGCCCACGCGCCTTGCGTTGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAActgct                                                                                                                                          <  8:120157/149‑1 (MQ=255)               cgcCTTGCTTTGCAGAATGAACTCCTCGCGATCATTGAATTCCTGCTGTTTTTCAGCGGGGCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATTGGCCGACGACGCCACCCTGCAACTGTTGGCCCAACTGCTGGCTGAAgc                                                                                                                                 <  6:327373/149‑1 (MQ=255)                gcaccgctgcgggtatggccagcggtgcgctggtggtgggcgtatcgttgcaccgggtgaaaatcagcagcaggttggccggcgcttcagccagcagtTGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAActgc                                                                                                                                           >  7:113112‑M1/99‑138 (MQ=255)                gcaccgctgcgggtatggccagcggtgcgctggtggtgggcgtatcgttgcaccgggtgaaaatcagcagcaggttggccggcgcttcagccagcagtTGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAActgc                                                                                                                                           <  8:113112‑M1/40‑1 (MQ=255)                   ttGCGTTGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCg                                                                                                                             >  4:50607/1‑149 (MQ=255)                         tGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAAc                                                                                                                       >  4:96078/1‑149 (MQ=255)                          gCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGTCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAAc                                                                                                                       <  1:317387/148‑1 (MQ=255)                             gAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACctgc                                                                                                                   >  4:153270/1‑149 (MQ=255)                              aaGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACctgct                                                                                                                  <  2:7485/149‑1 (MQ=255)                                   aCTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGa                                                                                                             <  1:42037/149‑1 (MQ=255)                                   aCTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGa                                                                                                             >  1:138529/1‑149 (MQ=255)                                       cACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGAtttt                                                                                                         <  5:164934/149‑1 (MQ=255)                                       cACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGAttt                                                                                                          <  3:322085/148‑1 (MQ=255)                                          gcgATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCAc                                                                                                      <  8:213334/149‑1 (MQ=255)                                           cgATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCAcc                                                                                                     <  4:30058/149‑1 (MQ=255)                                            gATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGaa                                                                                                                                   >  1:274156/1‑118 (MQ=255)                                            gATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGaa                                                                                                                                   <  2:274156/118‑1 (MQ=255)                                                 ttGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTg                                                                                                >  6:91096/1‑148 (MQ=255)                                                               gTTTTCAGCGTGCCTGGCCAACCGCTGGTGCTGTTGTTCGTCATCCTGCAATGGGCCGACGACGCCAGCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCTCCGGCCAACCTGCTTCTGATTTTCACCCGGTGCAACGATACGCcca                                                                                  <  5:323995/148‑1 (MQ=255)                                                               gTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGTCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGATGATTTTCACCCGGTGCAACGATACGCccac                                                                                 >  5:281281/1‑149 (MQ=255)                                                                   tCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCccaccac                                                                              <  3:153270/148‑1 (MQ=255)                                                                      gCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGGCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACg                                                                                           >  1:268591/1‑132 (MQ=255)                                                                      gCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACg                                                                                           <  2:268591/132‑1 (MQ=255)                                                                        cGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCCCCCGGTGCAACGATACGCCCCCCACCAgcgc                                                                        >  8:221403/1‑149 (MQ=255)                                                                          gCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCAc                                                                      <  2:267948/149‑1 (MQ=255)                                                                                 cAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGc                                                               <  5:91096/149‑1 (MQ=255)                                                                                   aCCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCa                                                             <  3:50607/149‑1 (MQ=255)                                                                                               gTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCgg                                                 >  6:185750/1‑149 (MQ=255)                                                                                                           ccTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGcacca                                     >  1:237022/1‑149 (MQ=255)                                                                                                            cTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGcaccac                                    >  4:237038/1‑149 (MQ=255)                                                                                                            cTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGcaccac                                    >  3:33726/1‑149 (MQ=255)                                                                                                             gcagttgggccaacagttgccgggtggcgtcgtcggcccaACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTgc                                              >  7:113112‑M2/41‑138 (MQ=255)                                                                                                             gcagttgggccaacagttgccgggtggcgtcgtcggcccaACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTgc                                              <  8:113112‑M2/98‑1 (MQ=255)                                                                                                                gttgggccaacagttgccgggtggcgtcgtcggcccaACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCt                                 >  6:130544‑M2/38‑148 (MQ=255)                                                                                                                    GGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTCCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAAc                             >  3:96078‑M1/1‑148 (MQ=255)                                                                                                                       CGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGc                         <  4:32324‑M1/149‑1 (MQ=255)                                                                                                                              gCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTgc                                              <  4:214548/121‑1 (MQ=255)                                                                                                                              gCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTgc                                              >  3:214548/1‑121 (MQ=255)                                                                                                                               ccACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTg                 <  3:32324/149‑1 (MQ=255)                                                                                                                               ccACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTg                 <  2:138529/149‑1 (MQ=255)                                                                                                                                cACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCCCCAGCGCACCGCTGGCCCTACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTgg                >  6:108316/1‑149 (MQ=255)                                                                                                                                   ccGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCg             >  8:308341/1‑149 (MQ=255)                                                                                                                                        aaCTGGTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTggg        <  2:288263/149‑1 (MQ=255)                                                                                                                                               ggcccaACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTg  <  5:130544‑M2/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CCGCCAAGCCCACGCGCCTTGCGTTGCAGAAGGAACTGCACGCGATCATTGAATTCCTGCAGGTTTTCAGCCGGCCTGGCCAACCGCTGGTGCTGTTCTTCGACGACCTGCAATGGGCCGACGACGCCACCCGGCAACTGTTGGCCCAACTGCTGGCTGAAGCGCCGGCCAACCTGCTGCTGATTTTCACCCGGTGCAACGATACGCCCACCACCAGCGCACCGCTGGCCATACCCGCAGCGGTGCGCAGCACCACGCTGAACCTGCGGCCGCTGGCCGTTGGGGCGGTG  >  NC_002947/5980632‑5980921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.