New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5990819 =	44 (0.850)	3 (0.060)	3/236	NT	7.1%	intergenic (‑153/‑76)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
	?	NC_002947	5990863 =	39 (0.830)					intergenic (‑197/‑32)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator

ATGTCCAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5990977‑5990819 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaagaggccgGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGC  >  NC_002947/5990863‑5991000                                                                                                                                                                                                                                                                                                           ATGTCCAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGC                                                                                                                                                      <  1:150420/149‑1       AGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAG                                                                                                                                                >  5:164356/1‑149         CGCCCGCCCGGCCGGTGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGC                                                                                                                                              <  4:116445/149‑1         CGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGC                                                                                                                                              >  1:285878/1‑149          GCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCC                                                                                                                                             >  3:286585/1‑149                                                                                                                    CGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCG                                     >  3:269789/1‑147                                                                                                                    CGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCG                                     <  4:269789/147‑1                                                                                                                      GCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGTCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCG                                 >  2:174139/1‑149                                                                                                                                                  gCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAACCTCAGCC     >  6:86046/2‑149                                                                                                                                                     CGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGGCCTCACCTCCCTCGACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCGCAAGGCATAACTCAGCCGGC  >  8:266844/1‑149                                                                                                                                                     CGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGC  >  2:121535/1‑149                                                                                                                                                                                                                                                                                                           ATGTCCAGCGCCCGCCCGGCCGGGGCGAAGCCGCCATGTTCGACGACCTGGGTGAAGTAGTAGAGGGAGTTGAGGTCTTCCAATGATCGGTCTCCGGGTATTGGGTTGCCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5990977‑5990819 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaagaggccgGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCAGCCGGC  >  NC_002947/5990863‑5991000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.