| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5990819 = | 44 (0.850) | 3 (0.060) | 3/236 | NT | 7.1% | intergenic (‑153/‑76) | ycaC‑III/PP_5249 | putative hydrolase/LysR family transcriptional regulator |
| ? | NC_002947 | 5990863 = | 39 (0.830) | intergenic (‑197/‑32) | ycaC‑III/PP_5249 | putative hydrolase/LysR family transcriptional regulator | |||||
CTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCC > NC_002947/5990678‑5990960 | cTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGc > 4:306641/1‑145 (MQ=255)cTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGc < 3:306641/145‑1 (MQ=255)cTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCctct > 7:249751/1‑149 (MQ=255) tAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCctct > 4:110534/1‑148 (MQ=255) gccggctgagttttgacttgggcatgtccagcgcccgcccggccggggcgaagccgccatgttcgacgacctgggtgaagtagtagagggagttgaggtcttccaatgatcggtctccgggtattgggttgcctgtacCGGCCTCTTcg > 2:121535‑M1/139‑149 (MQ=255) gccggctgagttatgccttgcgcatgtccagcgcccgcccggccggggcgaagccgccatgttcgacgacctgggtgaagtagtcgagggaggtgaggccttccaatgatcggtctccgggtattgggttgcctgtacCGGCCTCTTcg > 8:266844‑M1/139‑149 (MQ=255) ggctgaggtttgacttgggcatgtccagcgcccgcccggccggggcgaagccgccatgttcgacgacctgggtgaagtagtagagggagttgaggtcttccaatgatcggtctccgggtattgggttgcctgtacCGGCCTCTtcgcgc > 6:86046‑M1/136‑148 (MQ=255) aTGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCt > 5:54554/1‑148 (MQ=255) aTGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCt > 8:67410/1‑148 (MQ=255) aGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTcc < 3:110534/148‑1 (MQ=255) aGCAATCCGAGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCt < 7:74932/149‑1 (MQ=255) aTCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGa < 4:11849/149‑1 (MQ=255) gggTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGc > 1:128216/1‑116 (MQ=255) gggTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGc < 2:128216/116‑1 (MQ=255) gggTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCg > 7:258145/1‑147 (MQ=255) gggTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGaa < 5:107555/149‑1 (MQ=255) cgcccgcccggccggggcgaagccgccatgttcgacgacctgggtgaagtagtagagggagttgaggtcttccaatgatcggtctccgggtattgggttgcctgtacCGACCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGc > 2:174139‑M1/108‑149 (MQ=255) ttCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGcc > 6:77034/1‑149 (MQ=255) cgcgTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCgg > 6:164356/1‑149 (MQ=255) gcgTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCgg > 2:208850/1‑148 (MQ=255) gcgTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCgg > 2:325011/1‑148 (MQ=255) cgcccggccggggcgaagccgccatgttcgacgacctgggtgaagtagtagagggagttgaggtcttccaatgatcggtctccgggtattgggttgcctgtacCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCg > 3:269789‑M1/104‑147 (MQ=255) cgcccggccggggcgaagccgccatgttcgacgacctgggtgaagtagtagagggagttgaggtcttccaatgatcggtctccgggtattgggttgcctgtacCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCg < 4:269789‑M1/44‑1 (MQ=255) gATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAg < 8:258145/148‑1 (MQ=255) gCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAAcc < 5:77034/149‑1 (MQ=255) ttAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATAcc < 3:214822/149‑1 (MQ=255) aCCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAAt > 8:148637/1‑135 (MQ=255) aCCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAAt < 7:148637/135‑1 (MQ=255) ccTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGAt > 3:262674/1‑148 (MQ=255) tGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCAtt < 7:67410/148‑1 (MQ=255) tGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCAtt < 1:291587/148‑1 (MQ=255) ggTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGAc < 1:164105/149‑1 (MQ=255) tAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCt < 1:208850/149‑1 (MQ=255) tAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATAACAGGAGACCGATCATTGGAAgggat > 5:209861/1‑145 (MQ=255) gTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTc < 4:262674/148‑1 (MQ=255) ttAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAg < 3:173975/109‑1 (MQ=255) ttAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAg > 4:173975/1‑109 (MQ=255) ttAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCAt > 3:6045/1‑136 (MQ=255) ttAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCAt < 4:6045/136‑1 (MQ=255) gCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTc > 2:145176/1‑149 (MQ=255) aGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTccc > 4:286585/1‑149 (MQ=255) aTCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCctct < 7:271627/149‑1 (MQ=255) gCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTctac < 1:325011/146‑1 (MQ=255) cTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCtactac > 2:205330/1‑148 (MQ=255) cTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCtactac < 1:205330/148‑1 (MQ=255) aGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCa < 6:54554/148‑1 (MQ=255) gATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTg < 1:15927/112‑1 (MQ=255) gATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTg > 2:15927/1‑112 (MQ=255) gATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGgtcg > 7:266397/1‑149 (MQ=255) gATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGgtcg > 4:277410/1‑149 (MQ=255) gATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGgtcg > 4:272783/1‑149 (MQ=255) aTTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGgtcgt > 2:285878/1‑149 (MQ=255) gggCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCccgg > 3:82698/1‑149 (MQ=255) gCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCccggcc > 4:31912/1‑149 (MQ=255) tgtgTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAg > 4:210272/1‑55 (MQ=255) tgtgTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAg < 3:210272/55‑1 (MQ=255) | CTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCC > NC_002947/5990678‑5990960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |