| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 379770 = | 44 (0.850) | 4 (0.080) | 4/248 | NT | 8.3% | coding (67/1107 nt) | gbcB | glycine‑betaine dioxygenase subunit |
| ? | NC_002947 | 379814 = | 47 (0.950) | coding (111/1107 nt) | gbcB | glycine‑betaine dioxygenase subunit | |||||
GCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAGGCAAGCCCGTGATGCGGTCCTA > NC_002947/379629‑379915 | gcaggcagGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTg > 1:128232/1‑149 (MQ=255) gAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAgg < 2:2876/149‑1 (MQ=255) tgCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCAt < 3:290486/148‑1 (MQ=255) tgCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATc < 4:268722/149‑1 (MQ=255) gcgaATTATCGATGCCATGAAATGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGAc < 6:257815/147‑1 (MQ=255) cgcATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTg < 2:128232/149‑1 (MQ=255) cATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTgcg > 8:45957/1‑149 (MQ=255) atggtgtaggaccgcatcacgggcttgccttcgatctccagctccagggtaacgaactgccctggcttgaagaagaacatgatcggctggtcggccatgaagcagaagGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTgcg < 2:240097‑M1/41‑1 (MQ=255) ttATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGt < 5:291424/144‑1 (MQ=255) ttATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGt > 6:291424/1‑144 (MQ=255) ggaccgcatcacgggcttgccttcgatctccagctccagggtaacgaactgccctggcttgaagaagaacatgatcggctggtcggccatgaagcagaagGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCt > 1:240097‑M1/101‑149 (MQ=255) cATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGga > 4:163053/1‑122 (MQ=255) cATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGga < 3:163053/122‑1 (MQ=255) aTGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCtt > 3:14090/1‑148 (MQ=255) aTGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTc < 4:169741/149‑1 (MQ=255) gcatcacgggcttgccttcgatctccagctccagggtaacgaactgccctggcttgaagaagaacatgatcggctggtcggccatgaagcagaagGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTc > 7:90520‑M1/96‑143 (MQ=255) gcatcacgggcttgccttcgatctccagctccagggtaacgaactgccctggcttgaagaagaacatgatcggctggtcggccatgaagcagaagGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTc < 8:90520‑M1/48‑1 (MQ=255) gAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCAt > 3:90952/1‑149 (MQ=255) aaaaGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCG‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATg > 6:134000/1‑149 (MQ=255) cATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCa < 7:45957/149‑1 (MQ=255) gagaTGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCTTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGttctt < 4:312520/149‑1 (MQ=255) aCATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCACCCGATCATGTTCTTCTTCAAg > 1:132450/1‑149 (MQ=255) aTGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGc > 7:87755/1‑148 (MQ=255) cGATACCTTCCTCAATCCGGTCACTACCCGAGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGa > 1:24760/1‑126 (MQ=255) cGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGa < 2:24760/125‑1 (MQ=255) aTACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAg > 3:279464/1‑149 (MQ=255) cTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAg < 8:81493/140‑1 (MQ=255) cTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAg > 7:81493/1‑140 (MQ=255) ttCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGt > 1:220507/1‑149 (MQ=255) aTCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCctg > 5:86800/1‑149 (MQ=255) tCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAggg < 6:42869/133‑1 (MQ=255) tCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAggg > 5:42869/1‑133 (MQ=255) ccc‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGAt < 2:232492/148‑1 (MQ=255) c‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTAccc > 2:280572/1‑133 (MQ=255) c‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTAccc < 1:280572/133‑1 (MQ=255) c‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCg > 5:92594/1‑148 (MQ=255) aGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGaa < 4:14090/149‑1 (MQ=255) gACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAg < 2:220507/149‑1 (MQ=255) gACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAg < 4:89213/149‑1 (MQ=255) gACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAg < 6:92594/149‑1 (MQ=255) gACCTCGGCCAATCGCCGCCACATTGTGCGCTGCGGCAAGGGCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAg < 8:143751/149‑1 (MQ=255) aCCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAgg < 8:87755/149‑1 (MQ=255) ggCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAGGCaa < 6:86800/147‑1 (MQ=255) cgccACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAGGCAAGCCCGTGATGCg > 3:283076/1‑149 (MQ=255) gccACATTGTGAGCTGCTTCAAGGTCTTCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTGATGGCCGACCAGCCGATCATGTTCTTCTTCTAGCCAGGGCTGTTCGGTACCCTGGAGCTGGAGATCGAAGGCAAGCCCGTGATGCgg < 8:251277/149‑1 (MQ=255) cacaTTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCctg > 3:218070/1‑114 (MQ=255) cacaTTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCctg < 4:218070/114‑1 (MQ=255) cacaTTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAGGCAAGCCCGTGATGCGGTc < 4:283076/149‑1 (MQ=255) aTTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCACGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAGGCAAGCCCGTGATGCGGTCCTa > 5:244763/1‑149 (MQ=255) ttGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAGGCAAGCCCGTGATGCGGTCCTa > 7:100540/1‑148 (MQ=255) | GCAGGCAGGAATGTGCGTCGTCTTCAGCTTGCGCATTATCGATGCCATGAAAAGGGCCATAGTCGGCCGCTGGAGATGAACATGTCCGATACCTTCCTCAATCCGGTCACTACCC‑AGACCTGGGCCAATGGCCGCCACATTGTGCGCTGCGTCAAGGTCATCCAGGAGACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCATGTTCTTCTTCAAGCCAGGGCAGTTCGTTACCCTGGAGCTGGAGATCGAAGGCAAGCCCGTGATGCGGTCCTA > NC_002947/379629‑379915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |