New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	577883 =	39 (0.760)	4 (0.080)	4/250	NT	9.2%	coding (2920/3069 nt)	fdoG	formate dehydrogenase‑O major subunit
	?	NC_002947	577910 =	41 (0.830)					coding (2947/3069 nt)	fdoG	formate dehydrogenase‑O major subunit

CAGTTCGTCGAAATAGGCGAGGTGCTGGCCAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGTGAAAGTGGAGAAACTCT  >  NC_002947/577736‑578030                                                                                                                                                     |                                                                                                                                                    cgggcgatgatgtcttggctggccatcagagtttctccactttcacgaggaacgacttggactctggcgtctgcgtgttgccgtcaccgaggaacggcaccaaggtattggtcaggtagccatgccgggtagcgccggtgaagccccag                                                                                                                                                     >  1:46718‑M1/149‑149 (MQ=255)   ggcgatgatgtcttggctggccatcagagtttctccactttcacgaggaacgacttggactctggcgtctgcgtgttgccgtcaccgaggaacggcaccaaggtattggtcaggtatccatgccgggtagcgccggtgaagccccaGTg                                                                                                                                                   >  1:207568‑M1/147‑149 (MQ=255)       gtcgAAATAGGCGAGGTGCTGGCCAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCa                                                                                                                                              >  1:190190/1‑149 (MQ=255)            aaTAGGCGAGGTGCTGGCCAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCg                                                                                                                                         <  6:177670/149‑1 (MQ=255)                         cTGGCCAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCa                                                                                                                            >  7:4095/1‑149 (MQ=255)                           ggCCAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACt                                                                                                                          >  6:89634/1‑149 (MQ=255)                             ccAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTgg                                                                                                                        <  1:319250/149‑1 (MQ=255)                              cAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTggg                                                                                                                       >  1:299256/1‑149 (MQ=255)                                aCGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGc                                                                                                                     <  2:280633/149‑1 (MQ=255)                                aCGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGc                                                                                                                     <  4:15437/149‑1 (MQ=255)                                   agaAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGAAGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGCGCtt                                                                                                                   >  1:39586/1‑148 (MQ=255)                                        ggCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCgg                                                                                                             >  4:738/1‑149 (MQ=255)                                               aGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTAcc                                                                                                      >  7:145936/1‑149 (MQ=255)                                                       gACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATgg                                                                                              <  5:321245/149‑1 (MQ=255)                                                          cGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTAACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTa                                                                                           >  4:94323/1‑149 (MQ=255)                                                                 tggcgtctgcgtgttgccgtcaccgaggaacggcaccaaggtattggtcaggtagccatgccgggtagcgccggtgaagccccaGTGCACCAGATCGGCATTCCGCTGCACt                                                                                                                          >  5:110985‑M1/85‑112 (MQ=255)                                                                 tggcgtctgcgtgttgccgtcaccgaggaacggcaccaaggtattggtcaggtagccatgccgggtagcgccggtgaagccccaGTGCACCAGATCGGCATTCCGCTGCACt                                                                                                                          <  6:110985‑M1/28‑1 (MQ=255)                                                                   gtgtCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTTGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAAGAATCAGACCGTTCACCAGATCGGCATTCCGCTGCACTTGTGCTTCACCGGCGCTACCCGGCATgg                                                                                              <  2:238296/137‑1 (MQ=255)                                                                   gtgtCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACCAAATCGGATTCGCCCGCTCCTGGACAACAATCAGAACTTGCACCAGATCGGAATTAAACTGCACTGGGGCTTAACCGGCGCTCCCAGGAATgg                                                                                              >  1:238296/1‑138 (MQ=255)                                                                    tgtCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCaa                                                                                  >  2:43630/1‑148 (MQ=255)                                                                      tCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGTCC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTGCACCGGCGCTACCCGGCATGGCTACCTGACCAATAc                                                                               >  5:310754/1‑149 (MQ=255)                                                                          ggaaGCGTGGGCATATCGATGCGGTGGCGGTGGTGAGC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCAGTGGGGCTTCACCGGCGGTACCGGGCATGGGTACCTGACCAATACCTTg                                                                           <  2:39586/147‑1 (MQ=255)                                                                                 tGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGt                                                                    <  3:738/149‑1 (MQ=255)                                                                                    tcaccgaggaacggcaccaaggtattggtcaggtagccatgccgggtagcgccggtgaagccccaGTGCACCAGATCGGCATTCCGCTGCACTg                                                                                                                         <  5:147617‑M1/29‑1 (MQ=255)                                                                                    tcaccgaggaacggcaccaaggtattggtcaggtagccatgccgggtagcgccggtgaagccccaGTGCACCAGATCGGCATTCCGCTGCACTg                                                                                                                         >  6:147617‑M1/66‑94 (MQ=255)                                                                                        atCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCgg                                                                                                             >  2:233335/1‑101 (MQ=255)                                                                                        atCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCgg                                                                                                             <  1:233335/101‑1 (MQ=255)                                                                                                 gtggcggtggTAACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCaa                                                    <  3:94323/149‑1 (MQ=255)                                                                                                    gcggtggTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAacac                                                 >  1:6809/1‑149 (MQ=255)                                                                                                            gACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGc                                         >  7:157757/1‑149 (MQ=255)                                                                                                                 aaGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCaga                                     <  6:310754/149‑1 (MQ=255)                                                                                                                 aaGCGGATTCGCCCGCTGCAGGTCAACAACCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCa                                       >  3:209152/1‑147 (MQ=255)                                                                                                                   gCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGt                                   >  6:145512/1‑149 (MQ=255)                                                                                                                      gATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTcc                                 >  6:22653/1‑148 (MQ=255)                                                                                                                              cGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTc                        <  5:145512/149‑1 (MQ=255)                                                                                                                                 tGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTc                     <  2:299256/149‑1 (MQ=255)                                                                                                                                   cAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGt                   <  8:145936/149‑1 (MQ=255)                                                                                                                                        caacaaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCg                                                              <  5:185387/101‑1 (MQ=255)                                                                                                                                        caacaaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCg                                                              >  6:185387/1‑101 (MQ=255)                                                                                                                                         aacaaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGTGAAAGt             >  1:182047/1‑149 (MQ=255)                                                                                                                                          acaaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTTGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGTGAAAGTg            <  5:89634/149‑1 (MQ=255)                                                                                                                                          acaaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCa                                       >  5:95968/1‑122 (MQ=255)                                                                                                                                          acaaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCa                                       <  6:95968/122‑1 (MQ=255)                                                                                                                                            aaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTcc                                 >  6:16375/1‑126 (MQ=255)                                                                                                                                            aaTCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTcc                                 <  5:16375/126‑1 (MQ=255)                                                                                                                                                   ccGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGTGAAAGTGGAGAAActc   <  8:4095/149‑1 (MQ=255)                                                                                                                                                    cGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGTGAAAGTGGAGAAActct  <  4:209152/149‑1 (MQ=255)                                                                                                                                                    cGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGTGAAAGTGGAGAAActct  <  2:6809/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAGTTCGTCGAAATAGGCGAGGTGCTGGCCAACGAGAAAGGCATCAAGGCCGGCGACCGGGTACGGGTGTCGAGCAAGCGTGGGCATATCGATGCGGTGGCGGTGGTGACC‑AAGCGGATTCGCCCGCTGCAGGTCAACAATCAGACCGTGCACCAGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCGCTACCCGGCATGGCTACCTGACCAATACCTTGGTGCCGTTCCTCGGTGACGGCAACACGCAGACGCCAGAGTCCAAGTCGTTCCTCGTGAAAGTGGAGAAACTCT  >  NC_002947/577736‑578030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.