New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 734329	43 (0.830)	3 (0.060)	3/238	NT	6.7%	coding (988/1296 nt)	ndh	NADH dehydrogenase
	?	NC_002947	= 734369	44 (0.930)					coding (948/1296 nt)	ndh	NADH dehydrogenase

GGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATG  >  NC_002947/734182‑734474                                                                                                                                                    |                                                                                                                                                   ggTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCtgt                                                                                                                                                   <  5:186930/149‑1 (MQ=255)                  cccACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTTAGGCTTTGCGCCAGTATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGtt                                                                                                                                 <  1:260317/149‑1 (MQ=255)                       cgccgAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGAt                                                                                                                            >  4:276748/1‑149 (MQ=255)                           gagaAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCt                                                                                                                        <  6:101437/149‑1 (MQ=255)                               cgcgcGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCg                                                                                                                    <  7:306665/148‑1 (MQ=255)                                gcgcGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGGTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCgg                                                                                                                   <  6:83907/149‑1 (MQ=255)                                   cgacagcgacaCCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCt                                                                                                                        >  6:115695/1‑141 (MQ=255)                                   cgacagcgacaCCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCt                                                                                                                        <  5:115695/141‑1 (MQ=255)                                      cagcgacaCCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCg                                                                                                             <  1:275578/149‑1 (MQ=255)                                         cgacaCCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCggg                                                                                                           >  6:92571/1‑148 (MQ=255)                                           acacCAGCGAGCAATAGTCCTTGTACTCGTACGTCGGCACGGCCTTGTTCTCCAGCCGCGCCATCAGCCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCCCCTGTGCGCGCGCCGGCA‑CGTTACCATCGCAGCCGGGAAGCCGGcag                                                                                                        <  4:26814‑M2/149‑4 (MQ=255)                                              ccAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCGTTGCGCCATCATCGAAGCCTGCTGGTGCGCCGCCTGcccgcaacccggcagcgatcgtaacgtgccgccgcgcgcacaggcg                                                                                                      <  4:30517‑M1/149‑47 (MQ=255)                                                              cTTGTACTGGTAAGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAgg                                                                                     <  6:152017/149‑1 (MQ=255)                                                                  tACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGa                                                                                  <  5:92571/148‑1 (MQ=255)                                                                    cTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                <  3:26814/148‑1 (MQ=255)                                                                     tCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTCTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCCGGCAGCCGGCGCAGTCACCGAAGGCGAAGAt                                                                              >  5:20791/1‑149 (MQ=255)                                                                       gTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGAtgt                                                                            >  3:94348/1‑149 (MQ=255)                                                                       gTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGAtgt                                                                            >  8:84422/1‑149 (MQ=255)                                                                                    gCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGggt                                                               >  3:275022/1‑149 (MQ=255)                                                                                          ttCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGaa                                                                                 >  2:53190/1‑125 (MQ=255)                                                                                          ttCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGaa                                                                                 <  1:53190/125‑1 (MQ=255)                                                                                            ctcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGggt                                                               <  7:12826/141‑1 (MQ=255)                                                                                            ctcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGggt                                                               >  8:12826/1‑141 (MQ=255)                                                                                             tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAg                                                      >  4:36774/1‑149 (MQ=255)                                                                                             tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAg                                                      >  2:279842/1‑149 (MQ=255)                                                                                               cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                >  4:38461/1‑121 (MQ=255)                                                                                               cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                <  3:38461/121‑1 (MQ=255)                                                                                               cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAgg                                                     <  1:112756/148‑1 (MQ=255)                                                                                                 ggCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTa                                                  <  4:113059/149‑1 (MQ=255)                                                                                                        cTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGATGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCa                                           >  4:40061/1‑149 (MQ=255)                                                                                                          tCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggc                                                                                                   >  6:147356‑M2/1‑83 (MQ=255)                                                                                                          tCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggc                                                                                                   <  5:147356‑M2/91‑9 (MQ=255)                                                                                                           cAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCAc                                          <  7:84422/147‑1 (MQ=255)                                                                                                            aGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCAGCGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGa                                        >  1:90852/1‑149 (MQ=255)                                                                                                            aGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGAc                                       <  3:276748/149‑1 (MQ=255)                                                                                                            aGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGGTTGCAGGGTAGGGCGCACGAc                                       >  3:10735/1‑149 (MQ=255)                                                                                                              gCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGAc                                       >  4:271592/1‑147 (MQ=255)                                                                                                                tttGCGCCAGCATCGAAGCCTGCTGGTTCGCCGCCTGcccgcaacccggcagcgatcgtaacgtgccgccgcgcgcacagg                                                                                                        <  5:214648‑M1/81‑45 (MQ=255)                                                                                                                tttGCGCCAGCATCGAAGCCTGCTGGTACGCCGCCTGcccgcaacccggcagcgatcgtaacgtgccgccgcgcgcacagg                                                                                                        >  6:214648‑M1/1‑37 (MQ=255)                                                                                                                    cgcCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                <  3:789/100‑1 (MQ=255)                                                                                                                    cgcCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                >  4:789/1‑100 (MQ=255)                                                                                                                       cAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGa                            <  2:90852/149‑1 (MQ=255)                                                                                                                          cATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGc                         <  4:275022/149‑1 (MQ=255)                                                                                                                          cATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGc                         >  4:99928/1‑149 (MQ=255)                                                                                                                               aaGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCggttg                    >  6:189781/1‑149 (MQ=255)                                                                                                                                  ccTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCggtt                     >  2:140131/1‑145 (MQ=255)                                                                                                                                  ccTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCggtt                     <  1:140131/145‑1 (MQ=255)                                                                                                                                    tgctgGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGtt                              <  2:209131/134‑1 (MQ=255)                                                                                                                                         gTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGc          <  1:279842/149‑1 (MQ=255)                                                                                                                                             gccgccTGcccgcaacccggcagcgatcgtaacgtgccgccgcgcgcacaggcggcgcaccagcaggcttcgatgctggcgcaaagcctga                                                                 >  6:147356‑M1/1‑8 (MQ=255)                                                                                                                                             gccgccTGcccgcaacccggcagcgatcgtaacgtgccgccgcgcgcacaggcggcgcaccagcaggcttcgatgctggcgcaaagcctga                                                                 <  5:147356‑M1/91‑84 (MQ=255)                                                                                                                                              ccgccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATc      >  4:145552/1‑148 (MQ=255)                                                                                                                                               cgccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgatggcgcaacgcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgctgg    <  4:30517‑M2/149‑104 (MQ=255)                                                                                                                                                 ccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgtaccagcaggcttcgatgctggcgcaaa                                                                      >  6:214648‑M2/1‑44 (MQ=255)                                                                                                                                                 ccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgaaccagcaggcttcgatgctggcgcaaa                                                                      <  5:214648‑M2/81‑38 (MQ=255)                                                                                                                                                  cTGccggcttcccggctgcgatggtaacgtgccggcgcgcgcacagggggcgcaccagcaggcttcgatgctggcgcaaaggctgatggcgcggctggagaacaaggccgtgccgacgtacgagtacaaggactattgctcgctggtgt  <  4:26814‑M1/149‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GGTTACCCATCAGGTTGCCCACCGCCGAGAAGCGCGACAGCGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATG  >  NC_002947/734182‑734474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.