New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 734329	43 (0.830)	3 (0.060)	3/238	NT	6.7%	coding (988/1296 nt)	ndh	NADH dehydrogenase
	?	NC_002947	= 734369	44 (0.930)					coding (948/1296 nt)	ndh	NADH dehydrogenase

CGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACAC  >  NC_002947/734222‑734515                                                                                                                                                     |                                                                                                                                                   cgacaCCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCggg                                                                                                                                                    >  6:92571/1‑148 (MQ=255)   acacCAGCGAGCAATAGTCCTTGTACTCGTACGTCGGCACGGCCTTGTTCTCCAGCCGCGCCATCAGCCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCCCCTGTGCGCGCGCCGGCA‑CGTTACCATCGCAGCCGGGAAGCCGGcag                                                                                                                                                 <  4:26814‑M2/149‑4 (MQ=255)                      cTTGTACTGGTAAGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAgg                                                                                                                              <  6:152017/149‑1 (MQ=255)                          tACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGa                                                                                                                           <  5:92571/148‑1 (MQ=255)                            cTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                                                         <  3:26814/148‑1 (MQ=255)                             tCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTCTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCCGGCAGCCGGCGCAGTCACCGAAGGCGAAGAt                                                                                                                       >  5:20791/1‑149 (MQ=255)                               gTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGAtgt                                                                                                                     >  3:94348/1‑149 (MQ=255)                               gTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGAtgt                                                                                                                     >  8:84422/1‑149 (MQ=255)                                            gCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGggt                                                                                                        >  3:275022/1‑149 (MQ=255)                                                  ttCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGaa                                                                                                                          >  2:53190/1‑125 (MQ=255)                                                  ttCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGaa                                                                                                                          <  1:53190/125‑1 (MQ=255)                                                    ctcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGggt                                                                                                        <  7:12826/141‑1 (MQ=255)                                                    ctcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGggt                                                                                                        >  8:12826/1‑141 (MQ=255)                                                     tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAg                                                                                               >  2:279842/1‑149 (MQ=255)                                                     tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAg                                                                                               >  4:36774/1‑149 (MQ=255)                                                       cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                                                         >  4:38461/1‑121 (MQ=255)                                                       cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                                                         <  3:38461/121‑1 (MQ=255)                                                       cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAgg                                                                                              <  1:112756/148‑1 (MQ=255)                                                         ggCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTa                                                                                           <  4:113059/149‑1 (MQ=255)                                                                cTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGATGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCa                                                                                    >  4:40061/1‑149 (MQ=255)                                                                  tCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggc                                                                                                                                            <  5:147356‑M2/91‑9 (MQ=255)                                                                  tCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggc                                                                                                                                            >  6:147356‑M2/1‑83 (MQ=255)                                                                   cAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCAc                                                                                   <  7:84422/147‑1 (MQ=255)                                                                    aGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCAGCGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGa                                                                                 >  1:90852/1‑149 (MQ=255)                                                                    aGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGAc                                                                                <  3:276748/149‑1 (MQ=255)                                                                    aGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGGTTGCAGGGTAGGGCGCACGAc                                                                                >  3:10735/1‑149 (MQ=255)                                                                      gCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGAc                                                                                >  4:271592/1‑147 (MQ=255)                                                                            cgcCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                                                         <  3:789/100‑1 (MQ=255)                                                                            cgcCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAg                                                                                                                         >  4:789/1‑100 (MQ=255)                                                                               cAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGa                                                                     <  2:90852/149‑1 (MQ=255)                                                                                  cATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGc                                                                  <  4:275022/149‑1 (MQ=255)                                                                                  cATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGc                                                                  >  4:99928/1‑149 (MQ=255)                                                                                       aaGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCggttg                                                             >  6:189781/1‑149 (MQ=255)                                                                                          ccTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCggtt                                                              <  1:140131/145‑1 (MQ=255)                                                                                          ccTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCggtt                                                              >  2:140131/1‑145 (MQ=255)                                                                                            tgctgGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGtt                                                                       <  2:209131/134‑1 (MQ=255)                                                                                                 gTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGc                                                   <  1:279842/149‑1 (MQ=255)                                                                                                      ccgccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATc                                               >  4:145552/1‑148 (MQ=255)                                                                                                       cgccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgatggcgcaacgcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgctgg                                             <  4:30517‑M2/149‑104 (MQ=255)                                                                                                         ccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgtaccagcaggcttcgatgctggcgcaaa                                                                                                               >  6:214648‑M2/1‑44 (MQ=255)                                                                                                         ccTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgaaccagcaggcttcgatgctggcgcaaa                                                                                                               <  5:214648‑M2/81‑38 (MQ=255)                                                                                                                      cggcA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAAc                              >  7:104296/1‑149 (MQ=255)                                                                                                                            cGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGgc                         <  3:36774/149‑1 (MQ=255)                                                                                                                             gTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTgg                          <  7:17235/147‑1 (MQ=255)                                                                                                                             gTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTgg                          >  8:17235/1‑147 (MQ=255)                                                                                                                                  gATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGcgcgcg                    >  2:50749/1‑148 (MQ=255)                                                                                                                                         gCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCgg            <  4:10735/149‑1 (MQ=255)                                                                                                                                         gCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGATTGCAGGGTAGGGCGCACGACCAGCTCGTAGATTCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGAAAACCTGGCGCGCTGATACAgg            >  5:278128/1‑149 (MQ=255)                                                                                                                                              gTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGcc       <  6:288427/149‑1 (MQ=255)                                                                                                                                              gTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGcc       >  5:288427/1‑149 (MQ=255)                                                                                                                                               ttGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGcc       >  2:302762/1‑148 (MQ=255)                                                                                                                                                  cGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCcac    <  5:189781/148‑1 (MQ=255)                                                                                                                                                   gggCTGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCacac  >  6:69629/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGACACCAGCGAGCCATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCA‑CGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACAC  >  NC_002947/734222‑734515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.