New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	810546 =	48 (0.930)	3 (0.060)	3/252	NT	6.0%	coding (241/456 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
	?	NC_002947	810588 =	47 (0.940)					coding (283/456 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase

GTGGAATCTTTCAGGATGCGCTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTACGAGCGTTATGGTTTCAACGAAA  >  NC_002947/810400‑810678                                                                                                                                                    |                                                                                                                                     gTGGAATCTTTCAGGATGCGCTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCggc                                                                                                                                    >  7:58034/1‑149 (MQ=255)  accagggcgtcttcacggccgccggcaatcggataatagtcgcggcggcggccaatttcgttgaaaccataacgctcgtacaaacgataggccgactggttgctggcgcgcacttccagaaagcattcgcggccattgagctgataggc                                                                                                                                    <  1:200227‑M1/3‑1 (MQ=255)   ccagggcgtcttcacggccgccggcaatcggataatagtcgcggcggcggccaatttcgttgaaaccataacgctcgtacaaacgataggccgactggttgctggcgcgcacttccagaaagcattcgcggccattgagctgataggcc                                                                                                                                   >  2:326999‑M1/146‑149 (MQ=255)    cagggcgtcttcacggccgccggcaatcggataatagtcgcggcggcggccaatttcgttgaaaccataacgctcgtacaaacgataggccgactggttgctggcgcgcacttccagaaagcattcgcggccattgagctgatag                                                                                                                                      <  4:199907‑M1/1‑1 (MQ=255)    cagggcgtcttcacggccgccggcaatcggataatagtcgcggcggcggccaatttcgttgaaaccataacgctcgtacaaacgataggccgactggttgctggcgcgcacttccagaaagcattcgcggccattgagctgatag                                                                                                                                      >  3:199907‑M1/145‑145 (MQ=255)     aaTCTTTCCCGATGCCCCCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGGCATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCggcctgg                                                                                                                                <  4:12/149‑1 (MQ=255)         tttCAGGATGCGCTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCggcctgggcct                                                                                                                            >  2:11095/1‑149 (MQ=255)         tttCAGGATGCGCTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCggcctgggcct                                                                                                                            >  7:58224/1‑149 (MQ=255)                 tGCGCTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGgcctgcgcctgc                                                                                                                    <  8:58034/149‑1 (MQ=255)                    gcTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCg                                                                                                                                      >  3:136846/1‑128 (MQ=255)                    gcTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCg                                                                                                                                      <  4:136846/128‑1 (MQ=255)                           tCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGCAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCt                                                                                                          <  1:229224/149‑1 (MQ=255)                              tACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGAt                                                                                                       >  4:98802/1‑149 (MQ=255)                                cGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTTCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATg                                                                                                      <  5:104323/148‑1 (MQ=255)                                    gTCTGGCTGATGTTCGATGGCCAGCTGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCg                                                                                                 <  1:11095/149‑1 (MQ=255)                                       tGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGc                                                                                              >  3:58858/1‑149 (MQ=255)                                         gCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCggcctgg                                                                                                                                >  6:54041/1‑113 (MQ=255)                                         gCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCggcctgg                                                                                                                                <  5:54041/113‑1 (MQ=255)                                           gcggcggcggccaatttcgttgaaaccataacgctcgtacaaacgataggccgactggttgctggcgcgcacttccagaaagcattcgcggccattgagctgataGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTa                                                                                           >  8:60012‑M1/106‑149 (MQ=255)                                             aTGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTAt                                                                                          <  4:189069/147‑1 (MQ=255)                                             aTGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATc                                                                                         <  4:242676/148‑1 (MQ=255)                                                     tGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCATTAATAACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAAt                                                                                 >  1:99327/1‑149 (MQ=255)                                                     tGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATg                                                                                <  8:58224/149‑1 (MQ=255)                                                       gCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGc                                                                              >  7:37680/1‑149 (MQ=255)                                                        ccAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTa                                                                                           >  4:317648/1‑135 (MQ=255)                                                        ccAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTa                                                                                           <  3:317648/135‑1 (MQ=255)                                                         cagcagCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCcg                                                                            >  4:188060/1‑149 (MQ=255)                                                                  gTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCtt                                                                   >  1:124643/1‑149 (MQ=255)                                                                        cATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTgg                                                              >  5:220992/1‑148 (MQ=255)                                                                         aTGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGaa                                                            <  4:58858/149‑1 (MQ=255)                                                                            gtgtGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGt                                                          <  2:99327/148‑1 (MQ=255)                                                                             tgtgATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTgc                                                        >  7:239568/1‑149 (MQ=255)                                                                                        tgATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCaa                                              >  2:201207/1‑148 (MQ=255)                                                                                        tgATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCaa                                              <  1:201207/148‑1 (MQ=255)                                                                                        tgATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAAc                                             <  8:37680/149‑1 (MQ=255)                                                                                        tgATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAAc                                             <  2:124643/149‑1 (MQ=255)                                                                                          atcatcGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCa                                           >  8:10804/1‑149 (MQ=255)                                                                                           tcatcGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAg                                          >  4:299653/1‑149 (MQ=255)                                                                                             atcGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTc                                        <  6:220992/149‑1 (MQ=255)                                                                                                gATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGc                                     >  6:142443/1‑149 (MQ=255)                                                                                                  tGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCt                                   <  5:142443/149‑1 (MQ=255)                                                                                                        gcACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGtt                             <  3:98802/149‑1 (MQ=255)                                                                                                         cACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGttt                            <  7:10804/149‑1 (MQ=255)                                                                                                          aCCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTg                           >  6:61503/1‑149 (MQ=255)                                                                                                           ccTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGt                          <  5:61503/149‑1 (MQ=255)                                                                                                              gCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTAc                        >  7:236079/1‑148 (MQ=255)                                                                                                               cTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTAc                        >  3:60050/1‑147 (MQ=255)                                                                                                                  a‑aCATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGttt                            >  7:272362/1‑140 (MQ=255)                                                                                                                  a‑aCATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGttt                            <  8:272362/140‑1 (MQ=255)                                                                                                                  a‑aCATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTACGAGCg                   >  4:252992/1‑149 (MQ=255)                                                                                                                   ttccagaaagcattcgcggccattgagctgataGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTAt                                                                                          <  7:2227‑M1/45‑1 (MQ=255)                                                                                                                   ttccagaaagcattcgcggccattgagctgataGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTAt                                                                                          >  8:2227‑M1/34‑78 (MQ=255)                                                                                                                          ccGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTACGAGCGTTATGGt            <  3:299653/149‑1 (MQ=255)                                                                                                                                aaCCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTACGAGCGTTATGGTTTCAAc      >  2:200227/1‑149 (MQ=255)                                                                                                                                aaCCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTACGAGCGTTATGGTTTCAAc      <  8:239568/149‑1 (MQ=255)                                                                                                                                   cGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAAc                                             <  3:320901/107‑1 (MQ=255)                                                                                                                                   cGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAAc                                             >  4:320901/1‑107 (MQ=255)                                                                                                                                    ggAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTACGAGCGTTATGGTTTCAACGaaa  >  4:283572/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                     GTGGAATCTTTCAGGATGCGCTCAAATCGTACGAAGTCTGGCTGATGTTCGATGGCCAGCAGCAAGTGGGCCATGGTGTGATCAATGTGATCATCGATGAAGCGCACCTGCTCA‑ACATCACCGTAAAACCGGAAAACCAAGGCTGCGGCCTGGGCCTGCGCCTGCTCAAGCACCTGATGGCCCGGGCCTATCAGCTCAATGGCCGCGAATGCTTTCTGGAAGTGCGCGCCAGCAACCAGTCGGCCTATCGTTTGTACGAGCGTTATGGTTTCAACGAAA  >  NC_002947/810400‑810678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.